View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17504_low_3 (Length: 320)
Name: NF17504_low_3
Description: NF17504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17504_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 2 - 313
Target Start/End: Complemental strand, 11493372 - 11493061
Alignment:
| Q |
2 |
ggacacacctaatatgaggaatgtccgtgcttcatagctagtagccatccagaggatcattgtagaacatatgagaagcgatgcatgcataaaatgaaac |
101 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11493372 |
ggacacgcctaatatgaggaatgtccgtgcttcatagctagtagccatccagaggatcattgtagaacatatgagaagcgatgcatgcataaaatgaaac |
11493273 |
T |
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| Q |
102 |
aaaatgaaaacagtttatttggcatttctatggaatctatatgtggttggactctgatggttatgggtatttgtaaacaatgttggtgttgaattctttc |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11493272 |
aaaatgaaaacagtttatttggcatttctatggaatctatatgtggttgaactctgatggttatgggtatttgtaaagaatgttggtgttgaattctttc |
11493173 |
T |
|
| Q |
202 |
gaattagttgttcttcattcaatatatttccctccctgaaatattttcccaaactcaaaggaaacgtggccattaactttacttcattagcgatgcatgt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11493172 |
gaattagttgttcttcattcaatatatttccctccctgaaatattttcccaaactcaaaggaaacgtggccattaactttacttcattagcgatgcatgt |
11493073 |
T |
|
| Q |
302 |
atcctatctgtg |
313 |
Q |
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||||||| |||| |
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| T |
11493072 |
atcctatttgtg |
11493061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 16789104 - 16789141
Alignment:
| Q |
1 |
gggacacacctaatatgaggaatgtccgtgcttcatag |
38 |
Q |
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| T |
16789104 |
gggacacacctaatttgaggagtgtccgtgcttcatag |
16789141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 34895005 - 34894966
Alignment:
| Q |
1 |
gggacacacctaatatgaggaatgtccgtgcttcatagct |
40 |
Q |
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| T |
34895005 |
gggacacacctaatatgaggagtgtccgtgcttcatagct |
34894966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 30098420 - 30098456
Alignment:
| Q |
2 |
ggacacacctaatatgaggaatgtccgtgcttcatag |
38 |
Q |
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||||||||||||| |||||||||||||||||||||| |
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| T |
30098420 |
ggacacacctaatccgaggaatgtccgtgcttcatag |
30098456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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