View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17504_low_4 (Length: 302)
Name: NF17504_low_4
Description: NF17504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17504_low_4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 12 - 302
Target Start/End: Complemental strand, 29060311 - 29060021
Alignment:
| Q |
12 |
atgaacacataattaattgcaagtattgcaattgttaacttctcaaagttatcctattcaaccatttgaatcacctcaattttaatgttaaaagaaacac |
111 |
Q |
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| T |
29060311 |
atgaacacataattaattgcaagtattgcaattgttaacgtctcaaagttatcctattcaaccatttgaatcacctcaattttaatgttaaaagaaatac |
29060212 |
T |
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| Q |
112 |
tctattttttaaactatgtagatgctgctttccaagcatgaaattcatgtattattgtaatgttgaatctttatcctttccttgctaaacaatcattttc |
211 |
Q |
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| T |
29060211 |
tctattttttaaactatgtatatgttgctttccaagcatgaaattcatgtattattgtaatgttgaatctttatcctttccttgctaaacaatcattttc |
29060112 |
T |
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| Q |
212 |
ttaataatttattcattctttgnnnnnnngtgtattcaagagttaaataactgttggttcctctaacaatatgcataagtgtgattaattc |
302 |
Q |
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| T |
29060111 |
ttaataatttattcattctttgtttttttgtgtattcaagagttaaataactgttggttcctctaacaatatgcataagtgtgattaattc |
29060021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 65 - 233
Target Start/End: Complemental strand, 29061972 - 29061801
Alignment:
| Q |
65 |
ctattcaaccatttgaatcacctcaattttaatgttaaaagaaacactctattttttaaacta----tgtagatgctgctttccaagcatgaaattcatg |
160 |
Q |
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| T |
29061972 |
ctattcaaccatttgaattacctcaaagttaatgttaagagaaata-tctattttttaaactaatcctatgtatgttgctttccaagcatgaaattcatg |
29061874 |
T |
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| Q |
161 |
tattattgtaatgttgaatctttatcctttccttgctaaacaatcattttcttaataatttattcattctttg |
233 |
Q |
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| T |
29061873 |
tattattgaaatgtttaatctttatctttccgttactaaacagtcatttccttaatgatttattcattctttg |
29061801 |
T |
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