View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17504_low_5 (Length: 278)
Name: NF17504_low_5
Description: NF17504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17504_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 9045662 - 9045424
Alignment:
| Q |
18 |
tgaagtgtgaagggtaaatgcaaatgaagttcttagaacaacgcacgtatatatagagagcatgtagtgcaatgcatatattcatgggaaatagggtgga |
117 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||||||| ||||||||||||||| |||||||||||| |
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| T |
9045662 |
tgaagtgtgaagggtaaaggcaaatgaagttcttagaacaacacacgtatgtatagagaacatgtagtgcactgcatatattcatggaaaatagggtgga |
9045563 |
T |
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| Q |
118 |
tattaatttacatggaagatataagagatatgttggaaatagatagtggagtggaaatagataggtagtaaatgccatacatgtacatgcatcgaccttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9045562 |
tattaatttacatggaagatataagagatatgttgggaatagatagtggagtgggaat-----ggtagtaaatgccatacatgtacatgcatcgaccttg |
9045468 |
T |
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| Q |
218 |
attaataaagttggagtgtaaatttaacaaaacacgtatatata |
261 |
Q |
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||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
9045467 |
attgataaagttggagtgtaaatttaacaaaacacgtacatata |
9045424 |
T |
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Target: chr8 (Bit Score: 149; Significance: 9e-79; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 42936108 - 42935929
Alignment:
| Q |
18 |
tgaagtgtgaagggtaaatgcaaatgaagttcttagaacaacgcacgtatatatagagagcatgtagtgcaatgcatatattcatgggaaatagggtgga |
117 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42936108 |
tgaagtgtgaagggcaaatgcaaatgaagttcttagaacaacgcgcgtatatatagagaacatgtagtgcaatgcatatattcatgggaaatagggtgga |
42936009 |
T |
|
| Q |
118 |
tattaatttacatggaagatataagagatatgttggaaatagatagtggagtggaaatagataggtagtaaatgccatacatgta |
202 |
Q |
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| T |
42936008 |
tattaatttacatggaagatataagagatatgttggaaatagatagtggagtgggaat-----ggtagtaaatgccatacatgta |
42935929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 88 - 262
Target Start/End: Complemental strand, 26084363 - 26084194
Alignment:
| Q |
88 |
aatgcatatattcatgggaaatagggtggatattaatttacatggaagatataagagatatgttggaaatagatagtggagtggaaatagataggtagta |
187 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || | ||||| |
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| T |
26084363 |
aatgcatatattcatgggaaataggatggatattaatttacatggaagatataagagatatgttgggaatagatagtggagtgggaac-----gatagta |
26084269 |
T |
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| Q |
188 |
aatgccatacatgtacatgcatcgaccttgattaataaagttggagtgtaaatttaacaaaacacgtatatataa |
262 |
Q |
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| T |
26084268 |
aatgccatacatgtacatgcatcgaccttgattaataaagttggagtgtaaatttaacaaaacacgtatatataa |
26084194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 42935218 - 42935150
Alignment:
| Q |
194 |
atacatgtacatgcatcgaccttgattaataaagttggagtgtaaatttaacaaaacacgtatatataa |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42935218 |
atacatgtacatgcatcgaccttgattaataaagttggagtgtaaatttaacaaaacacgtatatataa |
42935150 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 139; Significance: 9e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 21762574 - 21762349
Alignment:
| Q |
18 |
tgaagtgtgaagggtaaatgcaaatgaagttcttagaacaacgcacgtatatatagagagcatgtagtgcaatgcatatattcatgggaaatagggtgga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||| | ||||||||| |||||| |
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| T |
21762574 |
tgaagtgtgaagggtaaatgcaaatgaagttcttagcacaacacacgtatatatagagaacatgtagtgcaatgcatatatgcctgggaaataaggtgga |
21762475 |
T |
|
| Q |
118 |
tattaatttacatggaagatataagagatatgttggaaatagatagtggagtggaaatagataggtagtaaatgccatacatgtacatgcatcgaccttg |
217 |
Q |
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|| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||| ||||| ||||||||||||| |||| |
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| T |
21762474 |
tactaatttacatggaagatataagagatatgttgggaatagatagtggagt-----aagaatggtagtaaatgtcatacctgtacatgcatcggcctta |
21762380 |
T |
|
| Q |
218 |
attaataaag-ttggagtgtaaatttaacaa |
247 |
Q |
| |
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|||||||||| ||| |||||||||||||||| |
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| T |
21762379 |
attaataaagtttgtagtgtaaatttaacaa |
21762349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 24258255 - 24258100
Alignment:
| Q |
18 |
tgaagtgtgaagggtaaatgcaaatgaagttcttagaacaacgcacgtatatatagagagca--tgtagtgcaatgcatatattcatgggaaatagggtg |
115 |
Q |
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||||||||||||| |||||||||||||||||||| ||||| ||| |||||| |||||| | ||||||||| ||||||||| |||||||||||||||| |
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| T |
24258255 |
tgaagtgtgaaggaaaaatgcaaatgaagttcttaacacaacacacatatatagagagagaaaatgtagtgcagtgcatatatgcatgggaaatagggtg |
24258156 |
T |
|
| Q |
116 |
gatattaatttacatggaagatataagagatatgttggaaatagatagtggagtgg |
171 |
Q |
| |
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||||||||||||||| |||||||||||||| ||||||| |||| ||| ||| |||| |
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|
| T |
24258155 |
gatattaatttacatagaagatataagagagatgttgggaatatataatggggtgg |
24258100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 30061847 - 30061789
Alignment:
| Q |
65 |
tatatatagagagcatgtagtgcaatgcatatattcatgggaaatagggtggatattaa |
123 |
Q |
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|||| |||| || ||||||||| |||| |||||||||||||||||||||||| |||||| |
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| T |
30061847 |
tatacatagtgaacatgtagtgtaatgtatatattcatgggaaatagggtgggtattaa |
30061789 |
T |
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