View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17504_low_6 (Length: 269)
Name: NF17504_low_6
Description: NF17504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17504_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 54956462 - 54956702
Alignment:
| Q |
14 |
agaggaaaaaacaattaaataaagccgaatagtatcatatttgagcttagaacaacgcaaaacttaacccaatagatcctaacaacctcgttgccgtggt |
113 |
Q |
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| T |
54956462 |
agaggaaaaaacaattaaataacgccgaatagtatcatatttgagcttagaacaacgcaaaacttaacccaatagatcctaacaacctcgttgccgtggt |
54956561 |
T |
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| Q |
114 |
caaggaagatgataattgacaaaggtcagggcgcaattgtacttggtgtttgacaaatagatgagaagtgagtaga---atgaacattgacagtccttgg |
210 |
Q |
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| T |
54956562 |
caaggaagatgataattgacaaaggtcagggcgcaattgtactgggtgtttgacaaatagatgagaagtgagtagaatgatgaacattgacagtgcttgg |
54956661 |
T |
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| Q |
211 |
gagcatgtaaaagcatatctgatgtcaaggtttcatcatac |
251 |
Q |
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| T |
54956662 |
gagcatgtaaaagcatatctgatgtcaaggtttcatcatac |
54956702 |
T |
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