View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17505_high_13 (Length: 268)
Name: NF17505_high_13
Description: NF17505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17505_high_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 4665312 - 4665063
Alignment:
| Q |
1 |
tttttgtttgctgaattagagactaaattaagatcaaatttttctcgtgaaacactttggtagctttaagcaagttttgacgtcaaattttctttggtag |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4665312 |
tttttgtttgctgtattagagactaaattaagatcaaatttttttcgtgaaacactttggtagctttaagcaagttttgacgtcaaattttttttggtag |
4665213 |
T |
|
| Q |
101 |
cttttaacaagttatacaaatcattcctgaaaaagaagtgataccatataattttgcattgtcatattgaataggaacgggaaaagaaagacaaaagaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4665212 |
cttttaacaagttatacaaatcattcctgaaaaagaagtgataccatataattttgcattgccatattgaataggaacgggaaaagaaagacaaaagaaa |
4665113 |
T |
|
| Q |
201 |
tatgacgagatttagtaatcaaatggtgtaaaataagtttgtgcataata |
250 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4665112 |
tatgacgagattaagtaatcaaatggtgtaaaataagtttgtgcataata |
4665063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University