View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17505_high_3 (Length: 498)
Name: NF17505_high_3
Description: NF17505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17505_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 20 - 490
Target Start/End: Original strand, 9503573 - 9504043
Alignment:
| Q |
20 |
ggttttacaaacttgtgtagatatgcaaatatacattagtctaccatttgagtctctagcttgcaagctttatatatttactatttacacacttgcatct |
119 |
Q |
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| T |
9503573 |
ggttttacaaacttgtatagatatgcaaatatacattagtctaccatttgagtctctagcttgcaagctttatatatttactatttacacacttacatct |
9503672 |
T |
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| Q |
120 |
gcaacttagtttgaataattatattcaattttctgttgggcaggtttttgggtttgtgcgaagttatgcatgccaaaatattggtctgttactctagtga |
219 |
Q |
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| T |
9503673 |
gcaacttagtttgaataattatattcaattttctgttgggcaggtttttgggtttgtgcgaagttatgcatgccaaaatattggtctgttactctagtga |
9503772 |
T |
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| Q |
220 |
tgcagagtatacatagaatgatggaaactgaatcattaactgaaggcttgcattccaaatattggttcagaagttgaacaattcaaatatttctgtgttg |
319 |
Q |
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| T |
9503773 |
tgcagagtatacatagaatgatggaaactgaatcattaactgaaggcttgcattccaaatattggttcagaagttgaacaattcaaatatttctgtgatg |
9503872 |
T |
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| Q |
320 |
acctccaagcgctgcatacgcctatggtgttatcttgcatttgatcacaagttttttcactgtacttgatgccaagaacttgcttaggacttgtattatt |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9503873 |
acctccaagcgctgcatacgcctatggtgttatcttgcatttgatcacaagttttttcactgtacttgatgccaagaacttgcttaggacttgtattatt |
9503972 |
T |
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| Q |
420 |
gtggtatatggtggatcatcttgggggtttaaactaattacttctcgatcactggttccctgccctttgct |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9503973 |
gtggtatatggtggatcatcttgggggtttaaactaattacttctcaatcactggttccctgccctttgct |
9504043 |
T |
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