View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17505_high_4 (Length: 467)
Name: NF17505_high_4
Description: NF17505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17505_high_4 |
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| [»] scaffold0149 (1 HSPs) |
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| [»] scaffold0888 (1 HSPs) |
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Alignment Details
Target: scaffold0149 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: scaffold0149
Description:
Target: scaffold0149; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 10 - 361
Target Start/End: Complemental strand, 31551 - 31203
Alignment:
| Q |
10 |
tttgtggaacaatacaatttattgttaataaaatcgacataatacttactaatgtacgagcataggtatgatcctctttatcaatgggccagtttaacta |
109 |
Q |
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| T |
31551 |
tttgtggaacaatacaatttattgttaataaaatcgacataatacttactaatgtacgagcataggtatgatcctctttatcaatggg----tttaacta |
31456 |
T |
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| Q |
110 |
cnnnnnnn-caacctaacttctctaccaaaaagcaacaaaagcagtaaaaatattagagggaagagaaaggaaaggtttctcttagtcataaatacagtg |
208 |
Q |
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| T |
31455 |
caaaaaaaacaacctaacttctctaccaaaaagcaacaaaagcagtaaaaatataagagggaagagaaaggaaaggtttctcttagtcataaatacagtg |
31356 |
T |
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| Q |
209 |
attaactcctagaaacaaaagggaatggaaaaacatctccacggaacaaccaaaagaaattttatgggggtaacaaagacaaacatagtatggcgggatg |
308 |
Q |
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| T |
31355 |
attaactcctagaaacaaaagggaatggaaaaacatctccacggaacaacgaaaagaaattttatgggggaaacaaagacaaacatagtatggcgggatg |
31256 |
T |
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| Q |
309 |
tgataacctttaaaattttttagctcatcttttttaacgattgtattcgttgg |
361 |
Q |
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| T |
31255 |
tgaaaacctttaaatttttatagctcatctttatcaacgattgaattcgttgg |
31203 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 14888295 - 14888210
Alignment:
| Q |
8 |
tctttgtggaacaatacaatttattgttaataaaatcgacataatacttactaatgtacgagcataggtatgatcctctttatcaa |
93 |
Q |
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| T |
14888295 |
tcttcgtggtacaatacaatatatttttgacaaagccgacataatacttactaacgtacgagcctaggtaagatcctctttatcaa |
14888210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0888 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0888
Description:
Target: scaffold0888; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 252 - 328
Target Start/End: Complemental strand, 3248 - 3174
Alignment:
| Q |
252 |
gaacaaccaaaagaaattttatgggggtaacaaagacaaacatagtatggcgggatgtgataacctttaaaattttt |
328 |
Q |
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| T |
3248 |
gaacaacgaaaagaaagtttatgggg--aacaaagacaaacaacgtatggagggatgtgaaaacctttcaagttttt |
3174 |
T |
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