View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17505_high_7 (Length: 415)
Name: NF17505_high_7
Description: NF17505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17505_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 33191121 - 33190720
Alignment:
| Q |
1 |
ggaagcagggataaatgtttagcttgaagggagcttgtcactagttaagctagcaaatttggtggttataggttgcggcataggaacgggagctaataca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33191121 |
ggaagcagggataaatgtttagcttgaagggagcttgtcactagttaagctagcaaatttggtggttataggttgcggcataggaacgggagctaataca |
33191022 |
T |
|
| Q |
101 |
acatcctcaagaggagtgacaataggtgcatcatggacaaccttatgcacgtcagatgaagcatctaagttctccaattcctcagacaaagtctccccca |
200 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33191021 |
acatcctctagaggagtgacaataggtgcatcatggacaaccttatgcacgtcagatgaagcatctaagttctccaattcctcagacaaagcctccccca |
33190922 |
T |
|
| Q |
201 |
aatccacaagattcccaacatccaaagaagcaaatgaattttgtagttctaggctcaaattttctgtacattcctgcgccatagctgcaatggcttcatt |
300 |
Q |
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||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33190921 |
aatccacaagattcccagcatccaaataagcaaatgaatttagtagttctaggctcaaattttctgtacattcctgcgccatagctgcaatggtttcatt |
33190822 |
T |
|
| Q |
301 |
ggattgattgactctaatggtatcacaatgagatgtaatttgagcttgagatgtaggagcaacctcagaatggatgccaacatccaccttccgggtttga |
400 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
33190821 |
ggattgattgactccaatggtatcacaatgagatgtaatttgagcttgagatgtaggagcaaccttagaatggatgctaacatccaccttccgggtttga |
33190722 |
T |
|
| Q |
401 |
gt |
402 |
Q |
| |
|
|| |
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| T |
33190721 |
gt |
33190720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 39332172 - 39331777
Alignment:
| Q |
1 |
ggaagcagggataaatgtttagcttgaagggagcttgtcactagttaagctagcaaatttggtggttataggttgcggcataggaacgggagctaataca |
100 |
Q |
| |
|
|||||||||||| || |||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||| || || || |
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| T |
39332172 |
ggaagcagggatcaaggtttggcttgaagggagcttgtcactagataagctagcaaatctggtggttataggttgcgacataggaacgggggcaaaacca |
39332073 |
T |
|
| Q |
101 |
acatcctcaagaggagtgacaataggtgcatcatggacaaccttatgcacgtcagatgaagcatctaagttctccaattcctcagacaaagtctccccca |
200 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||| ||||||| | |||||||||||| |||||||| |
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| T |
39332072 |
acattctcaagaggagtgacaataggtgcatcatggactgccttttgcatgtcagatgaagcatctatgttctccggtccctcagacaaagcctccccca |
39331973 |
T |
|
| Q |
201 |
aatccacaagattcccaacatccaaagaagcaaatgaattttgtagttctaggctcaaattttctgtacattcctgcgccatagctgcaatggcttcatt |
300 |
Q |
| |
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|||||| ||| ||| |||||||||||||||||||||||||||| |||||||||||||||| | || ||||| || |||||||||||| ||||||| |
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| T |
39331972 |
aatccataaggttcacaacatccaaagaagcaaatgaattttg------taggctcaaattttctctgcaatcctgtgcaatagctgcaatgtcttcatt |
39331879 |
T |
|
| Q |
301 |
ggattgattgactctaatggtatcacaatgagatgtaatttgagcttgagatgtaggagcaacctcagaatggatgccaacatccaccttccgggtttga |
400 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39331878 |
ggattgattaactctaatggtatcacaatgagatgtgatttgagcttgtgatgaaggagcaacctcagaatggatgccaacatccaccttccgggtttga |
39331779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 183; Significance: 7e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 22 - 356
Target Start/End: Complemental strand, 15187902 - 15187568
Alignment:
| Q |
22 |
gcttgaagggagcttgtcactagttaagctagcaaatttggtggttataggttgcggcataggaacgggagctaatacaacatcctcaagaggagtgaca |
121 |
Q |
| |
|
|||||||||||| |||||| | |||||||||| |||| | ||||||| |||||||||||||||| | ||||||| |||||||||| |||| ||||||| |
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| T |
15187902 |
gcttgaagggagtttgtcatttgttaagctagaaaatctagtggttaccggttgcggcataggaatgagagctaaatcaacatcctcgagagaagtgaca |
15187803 |
T |
|
| Q |
122 |
ataggtgcatcatggacaaccttatgcacgtcagatgaagcatctaagttctccaattcctcagacaaagtctcccccaaatccacaagattcccaacat |
221 |
Q |
| |
|
||||||||||||||||||||||| | || ||||||||||||||| | |||||||||||| | | |||||| ||||| ||||||||||| |||||||||| |
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|
| T |
15187802 |
ataggtgcatcatggacaaccttctacatgtcagatgaagcatccatgttctccaattcattaaacaaagcctccctcaaatccacaaagttcccaacat |
15187703 |
T |
|
| Q |
222 |
ccaaagaagcaaatgaattttgtagttctaggctcaaattttctgtacattcctgcgccatagctgcaatggcttcattggattgattgactctaatggt |
321 |
Q |
| |
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||||||||||||| ||||| ||||||||||| ||||||||||||||||| | |||| | |||||||||||| |||||||||||||||| ||||||||| | |
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| T |
15187702 |
ccaaagaagcaaaagaattgtgtagttctagtctcaaattttctgtacagtactgcacaatagctgcaatgtcttcattggattgattaactctaatgtt |
15187603 |
T |
|
| Q |
322 |
atcacaatgagatgtaatttgagcttgagatgtag |
356 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||| |
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|
| T |
15187602 |
atcacaatgaggtgtgatttgagcttgagatgtag |
15187568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 8831560 - 8831621
Alignment:
| Q |
22 |
gcttgaagggagcttgtcactagttaagctagcaaatttggtggttataggttgcggcatag |
83 |
Q |
| |
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||||||||||||||||||||| || || |||||| | ||||| |||| |||||| ||||||| |
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| T |
8831560 |
gcttgaagggagcttgtcacttgtcaaactagcatagttggtagttacaggttgaggcatag |
8831621 |
T |
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