View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17505_low_1 (Length: 700)

Name: NF17505_low_1
Description: NF17505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17505_low_1
NF17505_low_1
[»] chr4 (1 HSPs)
chr4 (1-681)||(47200672-47201342)
[»] chr7 (1 HSPs)
chr7 (613-681)||(20426221-20426289)


Alignment Details
Target: chr4 (Bit Score: 634; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 1 - 681
Target Start/End: Complemental strand, 47201342 - 47200672
Alignment:
Q  1 atatgatgctagaacataactgtaacaacaccaaaagaatcatttcattaattcattatttttcacggatataacaagaattttagcatatgaaactttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47201342 atatgatgctagaacataactgtaacaacaccaaaagaatcatttcattaattcattatttttcacggatataacaagaattttagcatatgaaactttg 47201243  T
Q  101 cttgaaatgaattattaccagtcatcaggagctgctttaactgcttgatcaaaatatgtctcagcacgaggagcatccttatgacactcccatatcaaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47201242 cttgaaatgaattattaccagtcatcaggagctgctttaactgcttgatcaaaatatgtctcagcacgaggagcatccttatgacactcccatatcaaat 47201143  T
Q  201 ctgcgtaaagtgataaaacgttaccatcgtttggattcgccaaaatcgctcttccacaatattcttccgctttcacatagtccttacgaacctataatca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47201142 ctgcgtaaagtgataaaacgttaccatcgtttggattcgccaaaatcgctcttccacaatattcttccgctttcacatagtccttacgaacctataatca 47201043  T
Q  301 ttccaaaaaaccaaattaacatcaattaatacaaaattaacatcctaaaatagtaattaagacataaacaaactttgaagttctttgaaattctaacgta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||    
T  47201042 ttccaaaaaaccaaattaacatcaattaatacaaaattaacatcctaaaatagtaattaagacataaacaaactttgaag----------ttctaacgta 47200953  T
Q  401 cctcttttaagtactttgcgtaattaccaagaaaaagcggatttccaggatttgcttcaatcattgtacggtaatacaaatcggtgctatcatttccatg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47200952 cctcttttaagtactttgcgtaattaccaagaaaaagcggatttccaggatttgcttcaatcattgtacggtaatacaaatcggtgctatcatttccatg 47200853  T
Q  501 atttgaatcaccgaatcttgaaactccaccgtcatttttgtcaaatccaccaccacctccttcttcaaccaaaacaagcatcgaaccaccgtctctggca 600  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47200852 atttgaatcaccgaatcttgaaactccaccgtcgtttttgtcaaatccaccaccacctccttcttcaaccaaaacaagcatcgaaccaccgtctctggca 47200753  T
Q  601 tcgacttcactctggctttcttccaactcggttaaagaacaaagcgcggaactaaatgacgccgttcttgaacgagcaccg 681  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  47200752 tcgacttcactctggctttcttcgaactcggttaaagaacaaagcgcggaactaaacgacgccgttcttgaacgagcaccg 47200672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 613 - 681
Target Start/End: Complemental strand, 20426289 - 20426221
Alignment:
Q  613 tggctttcttccaactcggttaaagaacaaagcgcggaactaaatgacgccgttcttgaacgagcaccg 681  Q
    ||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||| ||||||||||||    
T  20426289 tggctttcttccaactctgttaaagaacaaagcgcggaaccaaacgacgccgttctggaacgagcaccg 20426221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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