View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17505_low_11 (Length: 300)
Name: NF17505_low_11
Description: NF17505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17505_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 284
Target Start/End: Complemental strand, 1446566 - 1446295
Alignment:
| Q |
13 |
attctatccacagtttcatctgggacgatgaacacatatcgcataattgggcaacaataaaccctaaattgtctaatactattcttacttgtacaaccct |
112 |
Q |
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| T |
1446566 |
attccatccacagtttcatctgggacgatgaacacatatcgcataattgggcaacaataacccctaaattgtctaatactattcttacttgtacaaccct |
1446467 |
T |
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| Q |
113 |
tgttgtacttaagctcagttatctttatatgggtccggcattttgttattatcccataatattaccttcactcaaaaccctacatttgaaagacattaag |
212 |
Q |
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| T |
1446466 |
tgttgttcttaagctcagttatctttatatgggtccggcattttgttattatcccataatattaccttcactcaaaaccctacatttgaaagacattaag |
1446367 |
T |
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| Q |
213 |
tttgatcgatatggagatcttaagtgtcttctagggtattgtccagttattgaagatcttcaactatatcat |
284 |
Q |
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| T |
1446366 |
tttgatcgatatggagatcttaagtgtcttctagggtattgtccagttattgaagatcttcaactatatcat |
1446295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 53 - 281
Target Start/End: Complemental strand, 1459929 - 1459701
Alignment:
| Q |
53 |
gcataattgggcaacaataaaccctaaattgtctaatactattcttacttgtacaacccttgttgtacttaagctcagttatctttatatgggtccggca |
152 |
Q |
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| T |
1459929 |
gcataattgggaaagaatataccctgaatttcctaatactatctttactagagaaacccttgttattcttaagctcagtgaactttttatgggttctggg |
1459830 |
T |
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| Q |
153 |
ttttgttattatcccataatattaccttcactcaaaaccctacatttgaaagacattaagtttgatcgatatggagatcttaagtgtcttctagggtatt |
252 |
Q |
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| T |
1459829 |
ttttgtaattatctcataagattaccctcactcaaaaccctacatctgaaagacattgagtttcaacaatatggagatcttgattgtcttctagagggat |
1459730 |
T |
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| Q |
253 |
gtccagttattgaagatcttcaactatat |
281 |
Q |
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| T |
1459729 |
gtccagttcttgaagatcttcaactatat |
1459701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 12104846 - 12104882
Alignment:
| Q |
173 |
attaccttcactcaaaaccctacatttgaaagacatt |
209 |
Q |
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| T |
12104846 |
attaccctcactcaaaaccctacatttgaaatacatt |
12104882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 45810996 - 45810950
Alignment:
| Q |
173 |
attaccttcactcaaaaccctacatttgaaagacattaagtttgatc |
219 |
Q |
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| T |
45810996 |
attaccttcactcaaaaccctacatttgaaaaatattaactttgatc |
45810950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 820724 - 820760
Alignment:
| Q |
174 |
ttaccttcactcaaaaccctacatttgaaagacatta |
210 |
Q |
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| T |
820724 |
ttaccctcactcaaaacactacatttgaaagacatta |
820760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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