View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17505_low_16 (Length: 265)
Name: NF17505_low_16
Description: NF17505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17505_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 13 - 244
Target Start/End: Original strand, 11155617 - 11155848
Alignment:
| Q |
13 |
catcatcatcgatttggaagctgattttaatctgaggaccacctgccggagccggaggaatttccaaaacaaattttccaagcaagttgttttccctagc |
112 |
Q |
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| T |
11155617 |
catcatcatcgatttggaagctgattttaatctgaggaacacctgccggagccggaggaatttccaaaacaaattttccaagcaagttgttttccctagt |
11155716 |
T |
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| Q |
113 |
tattttcctctcaccttcataaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtaggaatgtgggtattc |
212 |
Q |
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| T |
11155717 |
tattttcctctcaccttcataaacatgaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcaggaattttggtattc |
11155816 |
T |
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| Q |
213 |
cttgggattattatgtccataatccccccatg |
244 |
Q |
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| T |
11155817 |
ctagggattattgtgttcataatccccccatg |
11155848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 11196064 - 11196300
Alignment:
| Q |
13 |
catcatcatcgatttggaagctgattttaatctgaggaccacctgccggagccggaggaatttccaaaacaaattttccaagcaagttgttttccctagc |
112 |
Q |
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| T |
11196064 |
catcgtcatcgatttggaagcggattatgatctgaggaacacctgccgcagcaggaggaatttccaacacaaatcttcctagcaagttgttgtccctagt |
11196163 |
T |
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| Q |
113 |
tattttcctctcaccttcataaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtaggaatgtgggtattc |
212 |
Q |
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| T |
11196164 |
tattttcctctcaccttcataaacatcaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcaggaattttggtattc |
11196263 |
T |
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| Q |
213 |
cttgggattattatgtccataatccccccatgtttct |
249 |
Q |
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| T |
11196264 |
ctagggattattatttccataatccccccatgtttct |
11196300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 100 - 241
Target Start/End: Original strand, 11160566 - 11160707
Alignment:
| Q |
100 |
tgttttccctagctattttcctctcaccttcataaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtagg |
199 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||| | ||||||||||||||||| |||||| | || ||| |
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| T |
11160566 |
tgttttccctagttattttcctctcaccttcataaacatgaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcagg |
11160665 |
T |
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| Q |
200 |
aatgtgggtattccttgggattattatgtccataatcccccc |
241 |
Q |
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| T |
11160666 |
aattttggtattcctagggattattgtgttcataatcccccc |
11160707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 100 - 244
Target Start/End: Original strand, 11199147 - 11199291
Alignment:
| Q |
100 |
tgttttccctagctattttcctctcaccttcataaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtagg |
199 |
Q |
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| T |
11199147 |
tgttttccctagttattttcctctcaccttcataaacatgaattagaatattcatgtggttgtgcaaatgtgtggtgaatacatgttccattttggcagg |
11199246 |
T |
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| Q |
200 |
aatgtgggtattccttgggattattatgtccataatccccccatg |
244 |
Q |
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||| | ||||||||| ||||||||| ||| ||||||||||||||| |
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| T |
11199247 |
aattttggtattcctagggattattgtgttcataatccccccatg |
11199291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 53 - 202
Target Start/End: Original strand, 11132375 - 11132524
Alignment:
| Q |
53 |
acctgccggagccggaggaatttccaaaacaaattttccaagcaagttgttttccctagctattttcctctcaccttcataaacatgaattaaaatattg |
152 |
Q |
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| T |
11132375 |
acctgccggagctgggggaatttccaaaacaaattttcctagcaagttgttccccatagttatttttctttcaccctcgtaaacatgaatcaaaatattg |
11132474 |
T |
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| Q |
153 |
atttggttgtcaacatgtgtggtgaatacatcttccatgtcggtaggaat |
202 |
Q |
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| T |
11132475 |
gtttggttatgaagatgtgttgtgaatacttgttccatgctggtaggaat |
11132524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 11169976 - 11170025
Alignment:
| Q |
93 |
agcaagttgttttccctagctattttcctctcaccttcataaacatgaat |
142 |
Q |
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| T |
11169976 |
agcaagttgttgtccttagttatttgcctctcaccctcataaacatgaat |
11170025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 12527925 - 12527978
Alignment:
| Q |
90 |
ccaagcaagttgttttccctagctattttcctctcaccttcataaacatgaatt |
143 |
Q |
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| T |
12527925 |
ccaagcaagttgttttcgctagctatcattctctcgccctcataaacatgaatt |
12527978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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