View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17505_low_2 (Length: 612)

Name: NF17505_low_2
Description: NF17505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17505_low_2
NF17505_low_2
[»] chr4 (3 HSPs)
chr4 (1-424)||(10779550-10779979)
chr4 (1-424)||(10973159-10973588)
chr4 (294-593)||(10782148-10782450)
[»] scaffold0155 (3 HSPs)
scaffold0155 (217-391)||(34280-34454)
scaffold0155 (264-385)||(26075-26196)
scaffold0155 (410-462)||(34209-34261)
[»] chr6 (12 HSPs)
chr6 (241-387)||(8843049-8843195)
chr6 (221-385)||(8647426-8647590)
chr6 (261-385)||(8507707-8507831)
chr6 (272-385)||(8548744-8548857)
chr6 (272-385)||(8625474-8625587)
chr6 (248-384)||(8514412-8514548)
chr6 (241-366)||(8527302-8527427)
chr6 (241-366)||(8541062-8541187)
chr6 (293-369)||(5082778-5082854)
chr6 (282-346)||(8627453-8627517)
chr6 (310-385)||(8834279-8834354)
chr6 (240-296)||(8830511-8830567)
[»] chr8 (1 HSPs)
chr8 (273-369)||(4538678-4538774)


Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-169; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 10779550 - 10779979
Alignment:
Q  1 attttgtgagtaaaaggctggttttcttatcttgaggcaggctaataaaacattcattaacgtgaaacttaatatcttctgaatctccagcaacagaata 100  Q
    |||||| ||||||| |||||||||| |||||||||||||| |||||||||||||||||||| |||||| | ||||||||||||||||||||||||   ||    
T  10779550 attttgcgagtaaagggctggtttttttatcttgaggcagactaataaaacattcattaacttgaaacgttatatcttctgaatctccagcaaca---ta 10779646  T
Q  101 ataatttatgcgatccaaattaaattttgcatccccaatcctggacctaacactatcaaggccagataattcatctgaacatatttgataatagtttgca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  10779647 ataatttatgcgatccaaattaaattttgcatccccaatcctggacctcacactctcagggccagataattcatctgaacatatttgataatagtttgca 10779746  T
Q  201 cttttaaccaattcacttaataggttaactgtgttggtacaattgttattaagcacagcgattgtgtaatatgcaaggtgaacaagat---ctacacctt 297  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||   |||||||||    
T  10779747 cttttaaccaattcatttaataggttaaatgtgttggtacaattgttattaagcacatcaattgtgtaatatgcaaggtgaacaagatctactacacctt 10779846  T
Q  298 ttgctccttttggctttgagttgagaagatttatacaatatgaaggatttgaggcttctttgcaaatgacatttacttcgacaactttagtggaaact-- 395  Q
    ||||||||  |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  10779847 ttgctcctcctggctttgagttgagaagatttaagcaatatgaaggatttgaggcttctttgcaaatgacatttacttcgacaactttagtggaaactga 10779946  T
Q  396 ----gaggaatcaacattaacatatagaataaa 424  Q
        ||||||||||||| ||||||| |||||||    
T  10779947 tttggaggaatcaacatcaacatattgaataaa 10779979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 10973159 - 10973588
Alignment:
Q  1 attttgtgagtaaaaggctggttttcttatcttgaggcaggctaataaaacattcattaacgtgaaacttaatatcttctgaatctccagcaacagaata 100  Q
    |||||| ||||||| |||||||||| |||||||||||||| |||||||||||||||||||| |||||| | ||||||||||||||||||||||||   ||    
T  10973159 attttgcgagtaaagggctggtttttttatcttgaggcagactaataaaacattcattaacttgaaacgttatatcttctgaatctccagcaaca---ta 10973255  T
Q  101 ataatttatgcgatccaaattaaattttgcatccccaatcctggacctaacactatcaaggccagataattcatctgaacatatttgataatagtttgca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  10973256 ataatttatgcgatccaaattaaattttgcatccccaatcctggacctcacactctcagggccagataattcatctgaacatatttgataatagtttgca 10973355  T
Q  201 cttttaaccaattcacttaataggttaactgtgttggtacaattgttattaagcacagcgattgtgtaatatgcaaggtgaacaagat---ctacacctt 297  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||   |||||||||    
T  10973356 cttttaaccaattcatttaataggttaaatgtgttggtacaattgttattaagcacatcaattgtgtaatatgcaaggtgaacaagatctactacacctt 10973455  T
Q  298 ttgctccttttggctttgagttgagaagatttatacaatatgaaggatttgaggcttctttgcaaatgacatttacttcgacaactttagtggaaact-- 395  Q
    ||||||||  |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  10973456 ttgctcctcctggctttgagttgagaagatttaagcaatatgaaggatttgaggcttctttgcaaatgacatttacttcgacaactttagtggaaactga 10973555  T
Q  396 ----gaggaatcaacattaacatatagaataaa 424  Q
        ||||||||||||| ||||||| |||||||    
T  10973556 tttggaggaatcaacatcaacatattgaataaa 10973588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 294 - 593
Target Start/End: Original strand, 10782148 - 10782450
Alignment:
Q  294 ccttttgctccttttggctttgagttgagaagatttatacaatatgaaggatttgaggcttctttgcaaatgacatttacttcgacaactttagtggaaa 393  Q
    |||||||||| |  || ||||||||||||||||||||  |||||||||||||| |||||||||||   |||| |||||||||| ||||||||||||||||    
T  10782148 ccttttgctcttcctgactttgagttgagaagatttaagcaatatgaaggattggaggcttcttt---aatgccatttacttcaacaactttagtggaaa 10782244  T
Q  394 ctga------ggaatcaacattaacatatagaataaagagcaccaacatgagaaaggagtattgcctcgtcatttaaaatctactcttaggctaatgtct 487  Q
    ||||      ||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10782245 ctgatttggaggaatcaacattaacatatagaagaaaaagcaccaacaagagaaaggagtattgcctcgtcatttaaaatctactcttaggctaatgtct 10782344  T
Q  488 tgaatgataaatattgtaaattaatgtaaaaatattttaacatattgtaaattaaccattgtcctaaattgccaacattgtaatctcgatcttcctcaag 587  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  10782345 tgaatgataaatattgtagattaatgtaaagatattttaacatattgtaaattaaccattgtcctaaattgccaacattgtaatctcgatcttcctaaag 10782444  T
Q  588 gtcctt 593  Q
    ||||||    
T  10782445 gtcctt 10782450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 217 - 391
Target Start/End: Complemental strand, 34454 - 34280
Alignment:
Q  217 ttaataggttaactgtgttggtacaattgttattaagcacagcgattgtgtaatatgcaaggtgaacaagatctacaccttttgctccttttggctttga 316  Q
    |||| ||||||| |||||| || ||||||| ||| |||||| | |||||||| | |||||||| ||||||||||||||||||| ||| |  ||| |||||    
T  34454 ttaagaggttaaatgtgtttgtccaattgtcattgagcacatcaattgtgtactctgcaaggttaacaagatctacaccttttactcgtcctggttttga 34355  T
Q  317 gttgagaagatttatacaatatgaaggatttgaggcttctttgcaaatgacatttacttcgacaactttagtgga 391  Q
    ||||||||||||||  |||||||||||||| | ||||||||| |||||||| |||||||| |||||||| |||||    
T  34354 gttgagaagatttaagcaatatgaaggattgggggcttctttacaaatgacttttacttcaacaactttggtgga 34280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 264 - 385
Target Start/End: Original strand, 26075 - 26196
Alignment:
Q  264 gtgtaatatgcaaggtgaacaagatctacaccttttgctccttttggctttgagttgagaagatttatacaatatgaaggatttgaggcttctttgcaaa 363  Q
    ||||||| |||||| | |||||||||||||  ||||||||||  ||||||||||||||| ||||||  ||||||||||||||| || |||||||||||||    
T  26075 gtgtaatttgcaagatcaacaagatctacattttttgctcctcctggctttgagttgaggagatttgaacaatatgaaggattggatgcttctttgcaaa 26174  T
Q  364 tgacatttacttcgacaacttt 385  Q
    | |||| ||| || ||||||||    
T  26175 taacatctacatcaacaacttt 26196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 410 - 462
Target Start/End: Complemental strand, 34261 - 34209
Alignment:
Q  410 aacatatagaataaagagcaccaacatgagaaaggagtattgcctcgtcattt 462  Q
    ||||| ||||||||| ||| |||||| |||| |||||||||||||| ||||||    
T  34261 aacatgtagaataaaaagccccaacaagagagaggagtattgcctcatcattt 34209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 7e-32; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 241 - 387
Target Start/End: Complemental strand, 8843195 - 8843049
Alignment:
Q  241 aattgttattaagcacagcgattgtgtaatatgcaaggtgaacaagatctacaccttttgctccttttggctttgagttgagaagatttatacaatatga 340  Q
    |||||| |||||||||| | |||||||| | |||||| | |||||||||||||||||||||||||  || |||||||||||||||||||  |||||| |     
T  8843195 aattgtcattaagcacatcaattgtgtattgtgcaagatcaacaagatctacaccttttgctcctcctgactttgagttgagaagatttgaacaatacgt 8843096  T
Q  341 aggatttgaggcttctttgcaaatgacatttacttcgacaactttag 387  Q
    |||||| ||||||||||||||||||| || ||| || ||||||||||    
T  8843095 aggattggaggcttctttgcaaatgatatctacatcaacaactttag 8843049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 221 - 385
Target Start/End: Original strand, 8647426 - 8647590
Alignment:
Q  221 taggttaactgtgttggtacaattgttattaagcacagcgattgtgtaatatgcaaggtgaacaagatctacaccttttgctccttttggctttgagttg 320  Q
    |||||||  ||||||||| ||||| | | |||||||| | |||||||| | ||||||||  |||||||||||||||||||| |||  | |||||||||||    
T  8647426 taggttatatgtgttggtccaattctcactaagcacatcaattgtgtattctgcaaggtcgacaagatctacaccttttgcacctccttgctttgagttg 8647525  T
Q  321 agaagatttatacaatatgaaggatttgaggcttctttgcaaatgacatttacttcgacaacttt 385  Q
    |||||||||  |||||||| |||||| ||||||||| |||||||||||| ||| || ||||||||    
T  8647526 agaagatttgaacaatatgtaggattggaggcttctctgcaaatgacatctacatcaacaacttt 8647590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 261 - 385
Target Start/End: Original strand, 8507707 - 8507831
Alignment:
Q  261 attgtgtaatatgcaaggtgaacaagatctacaccttttgctccttttggctttgagttgagaagatttatacaatatgaaggatttgaggcttctttgc 360  Q
    |||||||| | |||||| | |||||||||||||| |||||||| |  ||| ||||||||||||||||||  |||| |||||||||| |||||||||||||    
T  8507707 attgtgtattgtgcaagatcaacaagatctacactttttgctcatcctggttttgagttgagaagatttgaacaaaatgaaggattggaggcttctttgc 8507806  T
Q  361 aaatgacatttacttcgacaacttt 385  Q
    ||||||||| ||| || ||||||||    
T  8507807 aaatgacatctacatcaacaacttt 8507831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 272 - 385
Target Start/End: Complemental strand, 8548857 - 8548744
Alignment:
Q  272 tgcaaggtgaacaagatctacaccttttgctccttttggctttgagttgagaagatttatacaatatgaaggatttgaggcttctttgcaaatgacattt 371  Q
    ||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||    ||||||||||||||| || ||||| ||||| ||||||| |    
T  8548857 tgcaaggtggacaagatctacaccttttgctcctcctggctttgagttgagaagatacgaacaatatgaaggattggaagcttcattgcagatgacatct 8548758  T
Q  372 acttcgacaacttt 385  Q
    || || ||||||||    
T  8548757 acatcaacaacttt 8548744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 272 - 385
Target Start/End: Original strand, 8625474 - 8625587
Alignment:
Q  272 tgcaaggtgaacaagatctacaccttttgctccttttggctttgagttgagaagatttatacaatatgaaggatttgaggcttctttgcaaatgacattt 371  Q
    ||||||||| ||||||||||| ||||||||||||  |||||||||||||||||||| |  ||||||||||||||| || ||||| ||||| ||||||| |    
T  8625474 tgcaaggtggacaagatctacgccttttgctcctcctggctttgagttgagaagatatgaacaatatgaaggattggaagcttcattgcagatgacatct 8625573  T
Q  372 acttcgacaacttt 385  Q
    || || ||||||||    
T  8625574 acatcaacaacttt 8625587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 248 - 384
Target Start/End: Complemental strand, 8514548 - 8514412
Alignment:
Q  248 attaagcacagcgattgtgtaatatgcaaggtgaacaagatctacaccttttgctccttttggctttgagttgagaagatttatacaatatgaaggattt 347  Q
    |||||||||| | |||||||| | |||||||| ||||||||||||||||||||| |||  |||||| |||||||||||||||   ||||| ||  ||||     
T  8514548 attaagcacatcaattgtgtattgtgcaaggtcaacaagatctacaccttttgcacctcctggcttcgagttgagaagatttgagcaatacgattgatta 8514449  T
Q  348 gaggcttctttgcaaatgacatttacttcgacaactt 384  Q
    ||||||||||||||||||| || ||| || |||||||    
T  8514448 gaggcttctttgcaaatgatatctacgtcaacaactt 8514412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 241 - 366
Target Start/End: Complemental strand, 8527427 - 8527302
Alignment:
Q  241 aattgttattaagcacagcgattgtgtaatatgcaaggtgaacaagatctacaccttttgctccttttggctttgagttgagaagatttatacaatatga 340  Q
    |||| |||||||||||| | ||||||||   ||||||||  |||||||||||||||||||| |||  |||||| || ||||||||||||   ||||| ||    
T  8527427 aattattattaagcacatcaattgtgtatcgtgcaaggtcgacaagatctacaccttttgcacctcctggcttcgaattgagaagatttgagcaatacga 8527328  T
Q  341 aggatttgaggcttctttgcaaatga 366  Q
    |||||| || ||||||||||||||||    
T  8527327 aggattggatgcttctttgcaaatga 8527302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 241 - 366
Target Start/End: Original strand, 8541062 - 8541187
Alignment:
Q  241 aattgttattaagcacagcgattgtgtaatatgcaaggtgaacaagatctacaccttttgctccttttggctttgagttgagaagatttatacaatatga 340  Q
    |||| |||||||||||| | ||||||||   ||||||||  |||||||||||||||||||| |||  |||||| || ||||||||||||   ||||| ||    
T  8541062 aattattattaagcacatcaattgtgtatcgtgcaaggtcgacaagatctacaccttttgcacctcctggcttcgaattgagaagatttgagcaatacga 8541161  T
Q  341 aggatttgaggcttctttgcaaatga 366  Q
    |||||| || ||||||||||||||||    
T  8541162 aggattggatgcttctttgcaaatga 8541187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 293 - 369
Target Start/End: Complemental strand, 5082854 - 5082778
Alignment:
Q  293 accttttgctccttttggctttgagttgagaagatttatacaatatgaaggatttgaggcttctttgcaaatgacat 369  Q
    |||||||||||||  ||||||||||||||||||||||  |||||||||  |||| ||||||||||||||||||||||    
T  5082854 accttttgctcctcctggctttgagttgagaagatttgaacaatatgattgattggaggcttctttgcaaatgacat 5082778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 282 - 346
Target Start/End: Complemental strand, 8627517 - 8627453
Alignment:
Q  282 acaagatctacaccttttgctccttttggctttgagttgagaagatttatacaatatgaaggatt 346  Q
    |||||||||||||||||||| ||   ||||||||||||||||||||||  |||||||||||||||    
T  8627517 acaagatctacaccttttgcaccaactggctttgagttgagaagatttgaacaatatgaaggatt 8627453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 310 - 385
Target Start/End: Original strand, 8834279 - 8834354
Alignment:
Q  310 gctttgagttgagaagatttatacaatatgaaggatttgaggcttctttgcaaatgacatttacttcgacaacttt 385  Q
    ||||||||||||||||||||  |||||||||| |||  |||| |||| |||||||||||| ||| || ||||||||    
T  8834279 gctttgagttgagaagatttgaacaatatgaatgatcggaggattctctgcaaatgacatctacatcaacaacttt 8834354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 8830511 - 8830567
Alignment:
Q  240 caattgttattaagcacagcgattgtgtaatatgcaaggtgaacaagatctacacct 296  Q
    ||||||||||| |||||| | |||||||| | ||||||||  |||||||||||||||    
T  8830511 caattgttattgagcacatcaattgtgtattgtgcaaggttcacaagatctacacct 8830567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 273 - 369
Target Start/End: Complemental strand, 4538774 - 4538678
Alignment:
Q  273 gcaaggtgaacaagatctacaccttttgctccttttggctttgagttgagaagatttatacaatatgaaggatttgaggcttctttgcaaatgacat 369  Q
    |||||||  ||||||||| ||||||||||||||  ||||||||||||||||||||||  |||||||||  |||| ||||||||||||||||||||||    
T  4538774 gcaaggtcgacaagatctgcaccttttgctcctcctggctttgagttgagaagatttgaacaatatgattgattggaggcttctttgcaaatgacat 4538678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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