View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17505_low_22 (Length: 253)
Name: NF17505_low_22
Description: NF17505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17505_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 11910176 - 11910411
Alignment:
| Q |
1 |
cacatggatagaatcaaaatccaaaccagaaagagagataaattacacaaatatatacaaacgtctatcagcaaaacataattctgatatatttccgagc |
100 |
Q |
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| T |
11910176 |
cacatggatagaatcaaaatccaaaccagaaagagagataaattacacaaatatatacaaacatctatcagcaaaacatacttctgatatatttccgagc |
11910275 |
T |
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| Q |
101 |
tacccgcaataaataactagaaagaaagataaattacacaaacatataacatacttttttgagctattnnnnnnntattatacctgaaatctaataagaa |
200 |
Q |
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| T |
11910276 |
tatccgcaacaaataactagaaagagagataaattacacaaacatataacatacttttttgagctattaaaaaaatattatacctgaaatctaataagaa |
11910375 |
T |
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| Q |
201 |
attaccagaaattctagcaatagtttgaatatgttg |
236 |
Q |
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| T |
11910376 |
attaccagaaattctagcaatagtttgaatatgttg |
11910411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 56 - 152
Target Start/End: Original strand, 35574073 - 35574169
Alignment:
| Q |
56 |
tacaaacgtctatcagcaaaacataattctgatatatttccgagctacccgcaataaataactagaaagaaagataaattacacaaacatataacat |
152 |
Q |
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| T |
35574073 |
tacaaacatctatcagcaaaacataattctgatatatttcccagctatcagcaacgaataaccagaaagagagataaattacacaaatatatgacat |
35574169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 35574132 - 35574164
Alignment:
| Q |
24 |
aaccagaaagagagataaattacacaaatatat |
56 |
Q |
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| T |
35574132 |
aaccagaaagagagataaattacacaaatatat |
35574164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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