View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17505_low_23 (Length: 249)
Name: NF17505_low_23
Description: NF17505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17505_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 814127 - 814254
Alignment:
| Q |
1 |
gaatgttacttttcactccatcacaagcaatccacgaattctttgaactaacctccatatcctcgaggactcgttatttttcgtccttgctaattaacat |
100 |
Q |
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| T |
814127 |
gaatgttacttttcactccatcacaagcaatcgacgaattctttgaactaacctccatatcctcgaggactcgttatttttcctccttgctaattaacat |
814226 |
T |
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| Q |
101 |
taatttatttttacttttatgataatag |
128 |
Q |
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| T |
814227 |
taatttatttttacttttatcataatag |
814254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 814321 - 814353
Alignment:
| Q |
201 |
ctgaagttgttataataatagttacgacatgat |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
814321 |
ctgaagttgttataataatagttacgacatgat |
814353 |
T |
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