View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17505_low_24 (Length: 246)
Name: NF17505_low_24
Description: NF17505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17505_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 85 - 218
Target Start/End: Original strand, 31845737 - 31845867
Alignment:
| Q |
85 |
ccactcgaatcccaacttttgtgggaatctaacaaactagagaattgatctagttagattcatctaacaactgatattttgttagaggtaataaggctaa |
184 |
Q |
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| T |
31845737 |
ccactcaaatcccaacttttgtgggaatctaacaaactagagtatcgatctagttagattcatctaacaactgatattttgttagagttaataaggctag |
31845836 |
T |
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| Q |
185 |
tccttattattgagttattagtatcatatccaat |
218 |
Q |
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| T |
31845837 |
tccttattattgag---ttagtatcatatccaat |
31845867 |
T |
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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 31845706 - 31845768
Alignment:
| Q |
19 |
tattgagcaggacatgatccctacatccgttccactcaaatcccaactcatgtgggaatctaa |
81 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
31845706 |
tattgagcaggacatgatccctacatccgtcccactcaaatcccaacttttgtgggaatctaa |
31845768 |
T |
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