View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17505_low_27 (Length: 212)
Name: NF17505_low_27
Description: NF17505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17505_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 4665754 - 4665546
Alignment:
| Q |
1 |
gctaggctatcttgatgaatgcaggcttgagtggtggaatagagaaagggccattaataagtcctttggcaatgtgtctataagctgcttctgttaagtg |
100 |
Q |
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| T |
4665754 |
gctaggctatcttgatgaatgcaggcttgagtggtggaatagagaaagggccattaataagtcctttggcaatgtgtctataagctgcttctgttaagtg |
4665655 |
T |
|
| Q |
101 |
aattccatcccaatttgtatatgtagatggatctgcacacacttttgaacctgtagaaccgcattctgctgaatcgttaaaattgtaatgtccacctcca |
200 |
Q |
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| T |
4665654 |
aattccatcccaatttgtatatgtagatggatctgcacacacttttgaacctttagaaccgcattctgctgaatcgttaaaattgtaacgtccacctcca |
4665555 |
T |
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| Q |
201 |
ccacagcac |
209 |
Q |
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||||||||| |
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| T |
4665554 |
ccacagcac |
4665546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 4669053 - 4668846
Alignment:
| Q |
1 |
gctaggctatcttgatgaatgcaggcttgagtggtggaatagagaaagggccattaataagtcctttggcaatgtgtctataagctgcttctgttaagtg |
100 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4669053 |
gctaggctatcttaaagaatgcaggcttgagtggtggaatagagaaagggccgttaataagtcctttggcaatgtgtctataagctgcttctgttaagtg |
4668954 |
T |
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| Q |
101 |
aattccatcccaatttgtatatgtagatggatctgcacacacttttgaacctgtagaaccgcattctgctgaatcgttaaaattgtaatgtccacctcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||||||| || |||||||| |||||||||||||||||||||| ||| ||||||| |
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| T |
4668953 |
aattccatcccaatttgtatatgtagatggatcttcacatacttttgaacctttataaccgcatcttgctgaatcgttaaaattgtaacgtctacctcca |
4668854 |
T |
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| Q |
201 |
ccacagca |
208 |
Q |
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|||||||| |
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| T |
4668853 |
ccacagca |
4668846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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