View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17505_low_5 (Length: 461)
Name: NF17505_low_5
Description: NF17505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17505_low_5 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 106 - 452
Target Start/End: Complemental strand, 11910056 - 11909709
Alignment:
| Q |
106 |
tcttcacaattagaatttggctaattgaatcttctagataaatattcattcaactcagttatgtttttgacagggaaagggcactctgaagcagcaatta |
205 |
Q |
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| T |
11910056 |
tcttcataattagaatttggctaactgaatcttctagataaatattcattcaactcagttatgtttttgacagggaaagggcactctgaagcagcaatta |
11909957 |
T |
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| Q |
206 |
gccaacatccgatctgtcttagaggacttaaagtcaaagaaggctgagagaatcaaggaaattttagaaaga-gtcccaaatttctcagatctgtgctga |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
11909956 |
gccaacatccgatctgtcttagaggacttaaagtcaaagaaggctgagagaatcaaggaaattttagaaaaaagtcccaaatttctcagatctgtgctga |
11909857 |
T |
|
| Q |
305 |
aatagcatgttgtggacagtccaaagctgtcacggatcaagatgttgatcaatatgatctgaccaaggagaaattgggggaactcaaatcacacgttcat |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11909856 |
aatagcatgttgtggacagtccaaagctgtcacggatcaagatgttgatcaatgtgatctgaccaaggagaaattgggggaactcaaatcacacgttcat |
11909757 |
T |
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| Q |
405 |
gaacttcaaaatgaaaaggtgctaccaaattcaaaatatagtcgcata |
452 |
Q |
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| T |
11909756 |
gaacttcaaaatgaaaaggtgctacaaaattcaaaatataatcgcata |
11909709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 11910220 - 11910112
Alignment:
| Q |
1 |
taatttatctctctttctggtttgtgtattgattctatccatgttgagtagttaattattttgtcctgtaatcattatctgattctatgattaattatat |
100 |
Q |
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| T |
11910220 |
taatttatctctctttctggtttggattttgattctatccatgtggagtagttaattattttgtcctgtaatcattatctgattctatgattaattatat |
11910121 |
T |
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| Q |
101 |
cctattctt |
109 |
Q |
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||||||||| |
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| T |
11910120 |
cctattctt |
11910112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 106 - 452
Target Start/End: Complemental strand, 15581301 - 15580953
Alignment:
| Q |
106 |
tcttcacaattagaatttggctaattgaatcttctagataaatattcattcaactcagttatgtttttgacagggaaagggcactctgaagcagcaatta |
205 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||| |||||||||||||||||| |
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| T |
15581301 |
tcttcacaattataatttggctaattgaatcttctagataaatattcattcaattcagttctgtttttaacagggaaagggtactctgaagcagcaatta |
15581202 |
T |
|
| Q |
206 |
gccaacatccgatctgtcttagaggacttaaagtcaaagaaggctgagagaatcaaggaaattttagaaaga--gtcccaaatttctcagatctgtgctg |
303 |
Q |
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|| ||||| || |||| ||||||||||| ||||||| ||||||||||||| | ||||||||||||||| | ||||||||| || ||||| ||||||| |
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| T |
15581201 |
gctaacattagacctgtattagaggacttgaagtcaaggaaggctgagagagttgaggaaattttagaaataaagtcccaaatatcacagatatgtgctg |
15581102 |
T |
|
| Q |
304 |
aaatagcatgttgtggacagtccaaagctgtcacggatcaagatgttgatcaatatgatctgaccaaggagaaattgggggaactcaaatcacacgttca |
403 |
Q |
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|||||||| | |||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||| || |||| |
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| T |
15581101 |
aaatagcaggctgtggacagtccaaaggtgtcacggatcaagatgttgatcaatgtgatctgaccatggagaaattgggggaacttaaatcgcatcttca |
15581002 |
T |
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| Q |
404 |
tgaacttcaaaatgaaaaggtgctaccaaattcaaaatatagtcgcata |
452 |
Q |
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| T |
15581001 |
tgaacttcaaaatgaaaaggtgctaccaaattcgaaatatagtcacata |
15580953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 105 - 452
Target Start/End: Original strand, 8333230 - 8333579
Alignment:
| Q |
105 |
ttcttcacaattagaatttggctaattgaatcttctagataaatattcattcaactcagttatgtttttgacagggaaagggcactctgaagcagcaatt |
204 |
Q |
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|||||||||||||||||||| | |||||||||||| ||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||| |
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| T |
8333230 |
ttcttcacaattagaatttgacgaattgaatcttcctgataaatattcatccaacttagttctgcttttgacagggaaagggcactctgaagcagcaatt |
8333329 |
T |
|
| Q |
205 |
agccaacatccgatctgtcttagaggacttaaagtcaaagaaggctgagagaatcaaggaaattttagaaaga--gtcccaaatttctcagatctgtgct |
302 |
Q |
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|||||||||| | ||||| | |||||||| | || |||||| |||||| |||||||||||||||||| | |||||||||||||||||| ||||| |
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| T |
8333330 |
agccaacatcatacctgtcgtggaggacttgaggttcaagaagaaagagagagtcaaggaaattttagaaataaagtcccaaatttctcagatacgtgct |
8333429 |
T |
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| Q |
303 |
gaaatagcatgttgtggacagtccaaagctgtcacggatcaagatgttgatcaatatgatctgaccaaggagaaattgggggaactcaaatcacacgttc |
402 |
Q |
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| T |
8333430 |
gaaaaagcaggctgtggacagtccaaaggtgtcacggatcaagatgtggatcaatgtgatctgaccatggaaaaattagggaaactcaaatcacatctca |
8333529 |
T |
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| Q |
403 |
atgaacttcaaaatgaaaaggtgctaccaaattcaaaatatagtcgcata |
452 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8333530 |
atgaacttcaaaatgaaaaggtgctaccaaattcaaaatatagtcacata |
8333579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 213
Target Start/End: Complemental strand, 35218 - 35188
Alignment:
| Q |
183 |
agggcactctgaagcagcaattagccaacat |
213 |
Q |
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| T |
35218 |
agggcactctgaagcagcaattagccaacat |
35188 |
T |
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