View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17505_low_6 (Length: 438)
Name: NF17505_low_6
Description: NF17505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17505_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Complemental strand, 44005153 - 44004751
Alignment:
| Q |
18 |
tcataggtggaaaatttgttggatcttcaaaagatgtgatatctcatcatgttgatggatctctcaaacaaatgcttatggatgcaaaggccatttggtt |
117 |
Q |
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| T |
44005153 |
tcataggtggaaaatttgtaggatcctcaaaagatgtgatatctcatcatgttgatggatcactcaaacaaatgcttatggatgcaaaggccatttggtt |
44005054 |
T |
|
| Q |
118 |
ttagttatagtttcattcagaactctttataactttataccaaaagtggtacgaaggaaggagttctggtaatattttgcagacaaatgttcaaccagga |
217 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
44005053 |
ttagttatagtttcattcagaactctttatagctttataccaaaagtggtacgaaggaaggagttctggtaatattttgcagacaaatgtttaaacagga |
44004954 |
T |
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| Q |
218 |
cacatttggtttttcttgtgtgtgattctgtataatttcagttgatacaaagtctgtataaaatgtagtcttgttttttgcattttctaaagggctaatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44004953 |
cacatttggtttttcttgtgtgtgattctgtataatttcagttgatacgaagtctgtataaaatgtagtcttgttttttgcattttctaaagggctaatt |
44004854 |
T |
|
| Q |
318 |
atgtgtctgctaagatcataaactttgatcataagggcggtcgagtgcaccaagtatcaggtggggtttgaggagtgaggagggtagatgtatatagtat |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44004853 |
atgtgtctgctaagatcataaactttgatcataagggcggtcgagtgcaccaagtatcaggtggggtttgaggagtgaggagggtagatgtatgtagtat |
44004754 |
T |
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| Q |
418 |
tag |
420 |
Q |
| |
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||| |
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| T |
44004753 |
tag |
44004751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 44009079 - 44008949
Alignment:
| Q |
18 |
tcataggtggaaaatttgttggatcttcaaaagatgtgatatctcatcatgttgatggatctctcaaacaaatgcttatggatgcaaaggccatttggtt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44009079 |
tcataggtggaaaatttgttggatcttcaaaagatgtgatatctcatcatgttgatggatctctcaaacaaatgcttatggatgcaaaggccatttggtt |
44008980 |
T |
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| Q |
118 |
ttagttatagtttcattcagaactctttata |
148 |
Q |
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||||| ||| || |||||||||||||||||| |
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| T |
44008979 |
ttagtcatatttccattcagaactctttata |
44008949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 39846834 - 39846938
Alignment:
| Q |
18 |
tcataggtggaaaatttgttggatcttcaaaagatgtgatatctcatcatgttgatggatctctcaaacaaatgcttatggatgcaaaggccatttggtt |
117 |
Q |
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|||| |||||||||||||| || || ||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||| ||| | ||||||||||| |
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| T |
39846834 |
tcattggtggaaaatttgtagggtcatcaaaggatgtgatatctcttcatgttgatggatcactcaaacaaatgctcatggctgctagagccatttggtt |
39846933 |
T |
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| Q |
118 |
ttagt |
122 |
Q |
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|||| |
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|
| T |
39846934 |
ctagt |
39846938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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