View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17505_low_9 (Length: 353)
Name: NF17505_low_9
Description: NF17505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17505_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 35231423 - 35231674
Alignment:
| Q |
4 |
gaaatgaaatgtggtagtatgtatgaggaaattagtactctcttgaaaccctcatgctatgtatagctagttcataaataaatg--------------at |
89 |
Q |
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| T |
35231423 |
gaaatgaaatgtggtagtatgtatgaggaaattagtactctcttgaaaccctcatgctatgtatagctagttcataaataaatgatccagagacaatgat |
35231522 |
T |
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| Q |
90 |
tgattagaatgttaaattcttgtcaagaaaatttaatgggctaaagttagcaaaatctac---tatatcacaaaggaaagagaaaatgtatcttttcagg |
186 |
Q |
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| T |
35231523 |
tgattagaatgttaaattcttctcaagaaaaattaatgggctaaagttagcaaaatctactagtatatcacaaaggaaagagaaaatgtatcttttcagg |
35231622 |
T |
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| Q |
187 |
aatttttgttagg-tttagttagtccttgaacttgatgatcggtagttaata |
237 |
Q |
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| T |
35231623 |
aatttttgttaggttttagttagtccttgaacttgatgatcggtacttaata |
35231674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 244 - 338
Target Start/End: Original strand, 35231954 - 35232050
Alignment:
| Q |
244 |
ttagtttgatggttccttttattgaattaa---ctattgagctggaaatgttgctttgatatatgcgccctttaagaatttctcatgataggataatt |
338 |
Q |
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| T |
35231954 |
ttagtttgatggttccttttatt-atttaatgactattgagctggaaatgttgctttgatatatgcgccctttaagaatttctcatgataggataatt |
35232050 |
T |
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