View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17506_high_7 (Length: 222)
Name: NF17506_high_7
Description: NF17506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17506_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 17136168 - 17135973
Alignment:
| Q |
10 |
gcactagacctcagtggcagttaagtaaatgagaaatgcta--aacatagaaagagaattactcacgaatgcattgcgacataatgtgaacggctgttca |
107 |
Q |
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| T |
17136168 |
gcactagacctgagtggtaggtaagtaaatgagaaattctatgaacatagcaagagaattactcacgaatgcattgcgacataatgtgattggctgttca |
17136069 |
T |
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| Q |
108 |
ataccactgccgagcatgttttccattatttccagaacattgtgcacactcaactcataacaatagcttgcgtgaaaattcacgagagtacaattc |
203 |
Q |
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| T |
17136068 |
ataccactgccgagcatgttttccattatttccggaacattgtgcacacttaactcataataatatccttcgtgaaaattcacaagtgcacaattc |
17135973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 17347648 - 17347843
Alignment:
| Q |
10 |
gcactagacctcagtggcagttaagtaaatgagaaatgcta--aacatagaaagagaattactcacgaatgcattgcgacataatgtgaacggctgttca |
107 |
Q |
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| T |
17347648 |
gcactagacctgagtggtaggtaagtaaatgagaaattctatgaacatagcaagagaattactcacgaatgcattgcgacataatgtgattggctgttca |
17347747 |
T |
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| Q |
108 |
ataccactgccgagcatgttttccattatttccagaacattgtgcacactcaactcataacaatagcttgcgtgaaaattcacgagagtacaattc |
203 |
Q |
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| T |
17347748 |
ataccactgccgagcatgttttccattatttccggaacattgtgcacacttaactcataataatatccttcgtgaaaattcacaagtgcacaattc |
17347843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 40 - 167
Target Start/End: Original strand, 7230366 - 7230493
Alignment:
| Q |
40 |
gagaaatgctaaacatagaaagagaattactcacgaatgcattgcgacataatgtgaacggctgttcaataccactgccgagcatgttttccattatttc |
139 |
Q |
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| T |
7230366 |
gagaaatgctaaacataacgatagaattactcatgaatgcattgcgacataaagtgattggctgtttgataccactaccgagcatgttttctactatttc |
7230465 |
T |
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| Q |
140 |
cagaacattgtgcacactcaactcataa |
167 |
Q |
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| T |
7230466 |
cagaacataatgcacagtcaactcataa |
7230493 |
T |
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