View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17506_low_1 (Length: 488)
Name: NF17506_low_1
Description: NF17506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17506_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 63 - 472
Target Start/End: Complemental strand, 18407194 - 18406785
Alignment:
| Q |
63 |
ggacttttggcatatttttatacgagcttttatacggaacaacaccgtttaaaggtaatggaaaccgagcaacgctttttaatgttgtagggcagccttt |
162 |
Q |
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| T |
18407194 |
ggacttttggcatatttttatacgagcttttatacggaacaacaccgtttaaaggtaatggaaaccgagcaacgctttttaatgttgtagggcagccttt |
18407095 |
T |
|
| Q |
163 |
aaggtttcctgaccatccttccgctagtccggtagcgagggatcttattagagggttgttggttaaagagcctcataagagaattgcttataaaagaggt |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18407094 |
aaggtttcctgaccatccttccgctagtccggtagcgagggatcttattagagggttgttggttaaagagcctcataagagaattgcttataaaagaggt |
18406995 |
T |
|
| Q |
263 |
gctactgagattaaacaacatccatttttcgaaggtgtgaattgggctttgattcgaagttctactcctccgattatacctgaaacgttcgattttagtc |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18406994 |
gctactgagattaaacaacatccatttttcgaaggtgttaattgggctttgattcgaagttctactcctccgattatacctgaaacgttcgattttagtc |
18406895 |
T |
|
| Q |
363 |
agtatgttagtaaggaaactgttgtggctgctgctgataataagaagattgttgatattgttagtgataaaaatagtaagatgcagcatgcttcttctta |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
18406894 |
agtatgttagtaaggaaactgttgtggctgctgctgataataagaagattgttgatattgttagtgataaaaatagtaagatgcagcatgattcttctta |
18406795 |
T |
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| Q |
463 |
tgaagatttt |
472 |
Q |
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| T |
18406794 |
tgaagatttt |
18406785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 203 - 310
Target Start/End: Complemental strand, 26569333 - 26569226
Alignment:
| Q |
203 |
gatcttattagagggttgttggttaaagagcctcataagagaattgcttataaaagaggtgctactgagattaaacaacatccatttttcgaaggtgtga |
302 |
Q |
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|||||||||||||| |||||| |||| || ||||| ||||||||||| ||||||||||| || || || || ||||| ||||||||||| ||||| |||| |
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| T |
26569333 |
gatcttattagaggattgttgattaaggaacctcagaagagaattgcatataaaagaggagcaacagaaataaaacagcatccattttttgaaggagtga |
26569234 |
T |
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| Q |
303 |
attgggct |
310 |
Q |
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|||||||| |
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| T |
26569233 |
attgggct |
26569226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 248 - 315
Target Start/End: Complemental strand, 9940465 - 9940398
Alignment:
| Q |
248 |
gcttataaaagaggtgctactgagattaaacaacatccatttttcgaaggtgtgaattgggctttgat |
315 |
Q |
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| T |
9940465 |
gcttataaaagaggcgcaaccgagattaaacaacatcccttttttgaaggcgtgaattgggccttgat |
9940398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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