View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17506_low_2 (Length: 464)
Name: NF17506_low_2
Description: NF17506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17506_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 2264216 - 2263774
Alignment:
| Q |
1 |
tattatcacggcggatctaacattgtttttcacatcgtacgaattcttgcctttatcaatttggttggaattattatcatgaagactcgtcttcttcatt |
100 |
Q |
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| T |
2264216 |
tattatcacggcggatctaacattgtttttcacatcgtacgaattcttgcctttatcaatttggttggaattattatcatgaagactcgtcttcttcatt |
2264117 |
T |
|
| Q |
101 |
tttgcaccaatcgttatttcaagggacttgatttcatacatatgaagacagtcaaatcaagtcgtagaaaaatattatcaatatataaaattgattttat |
200 |
Q |
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|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2264116 |
ttggcaccaatcgttatttcaagggacttgatttcgtacatatgaagacagtcaaatcaagtcgtagaaaaatattatcaatatataaaatttattttat |
2264017 |
T |
|
| Q |
201 |
acagnnnnnnncttcaaattggacgaaataagtatttggtgtctataaatattttaaattttgcttttagtctttctnnnnnnnttcttccatttgcggt |
300 |
Q |
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||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
2264016 |
acattttttttcttcaaattggactaaataagtatttggtctctataaatattttaaattttgcttttagtcttttt---caaattcttccatttgcggt |
2263920 |
T |
|
| Q |
301 |
cctcttaatattttccaataccacttataactgtgctcacgtggattccttcaaaatttgaatttttatcttgcaatcatg-nnnnnnnngtcaagtaat |
399 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | |
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| T |
2263919 |
cctcctaatatttttcaataccacttataactgtgctcacgtggattcattcaaaatttgaatttttatcttgcaatcatgtttttttttgtcaagtagt |
2263820 |
T |
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| Q |
400 |
ctagtaacttgaagttcacctcttattgtgaatagttagggtgtca |
445 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
2263819 |
ctagtaacttaaagttcacctcttattgtgaataattagggtgtca |
2263774 |
T |
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