View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17506_low_3 (Length: 377)

Name: NF17506_low_3
Description: NF17506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17506_low_3
NF17506_low_3
[»] chr3 (1 HSPs)
chr3 (15-377)||(9166122-9166487)
[»] chr8 (2 HSPs)
chr8 (65-290)||(37714154-37714379)
chr8 (140-359)||(9741004-9741223)
[»] chr2 (5 HSPs)
chr2 (17-370)||(42051892-42052246)
chr2 (112-324)||(43449926-43450138)
chr2 (319-359)||(32623004-32623044)
chr2 (112-178)||(9678332-9678398)
chr2 (113-178)||(33035788-33035853)
[»] chr5 (2 HSPs)
chr5 (17-194)||(26755444-26755621)
chr5 (112-209)||(35414383-35414480)
[»] scaffold0533 (1 HSPs)
scaffold0533 (28-178)||(127-277)
[»] chr6 (2 HSPs)
chr6 (123-201)||(26586485-26586563)
chr6 (277-359)||(26586627-26586709)
[»] chr4 (2 HSPs)
chr4 (112-356)||(29002271-29002516)
chr4 (112-186)||(51072497-51072571)
[»] scaffold0309 (1 HSPs)
scaffold0309 (112-209)||(1066-1163)
[»] chr7 (1 HSPs)
chr7 (111-190)||(21415832-21415911)
[»] chr1 (3 HSPs)
chr1 (112-177)||(12045531-12045596)
chr1 (115-184)||(15175094-15175163)
chr1 (112-180)||(44440061-44440129)


Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 15 - 377
Target Start/End: Complemental strand, 9166487 - 9166122
Alignment:
Q  15 aataacctttgatagggtcaaggatccatcgccacatgtctgtattattttcctgcaaaacaaagtcagccagcaaacctgcacactccacaattgtctc 114  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||| ||||||    
T  9166487 aataacctttgatagggtcaaggatccatcgccacctgtctgtattatcttcctacaaaacaaagtcagccagcaaacccgcacactccacaactgtctc 9166388  T
Q  115 ctctttccaagccaagaggcgccttctccacacccatgcaccaccaccaacctcccaccctctctccgccatttccctcatagtcgcccctttgtctata 214  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||    
T  9166387 ctcttcccaagccaagaggcgccttctccacacccatgcaccaccaccaaccgcccaccctctctccgccatctccctcacagtcgcccctttgtctata 9166288  T
Q  215 atcaaatgaaaaatgcgagaaaattgcactcttaatggtgctcc---ccccactgaattgtctaaccagaagtaagtactgctcccttcacccaccgccg 311  Q
    || |||| ||||||||||| ||||||||||||||||||||||||   ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9166287 atgaaataaaaaatgcgaggaaattgcactcttaatggtgctcccccccccactgaattgtctaaccagaagtaagtattgctcccttcacccaccgccg 9166188  T
Q  312 tacgaatattatcttcaaaccaattctccactcccacaccaacaccactacgaataccatagagca 377  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  9166187 tacgaatattatcttcaaaccaattctccgctcccacaccaacaccactacgaataccagagagca 9166122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 65 - 290
Target Start/End: Complemental strand, 37714379 - 37714154
Alignment:
Q  65 tcctgcaaaacaaagtcagccagcaaacctgcacactccacaattgtctcctctttccaagccaagaggcgccttctccacacccatgcaccaccaccaa 164  Q
    |||| ||||||||  |||| ||||||| | |||||||| || |  |||| ||| | ||||||||| |||| ||| |||| |||||| ||||||||| |||    
T  37714379 tcctacaaaacaatatcagacagcaaagccgcacactctacgacagtcttctcctcccaagccaaaaggcacctcctccgcacccaggcaccaccatcaa 37714280  T
Q  165 cctcccaccctctctccgccatttccctcatagtcgcccctttgtctataatcaaatgaaaaatgcgagaaaattgcactcttaatggtgctccccccac 264  Q
    |   |||||||||||||||||||||||||| || || ||||||||||| | |||||| ||||| ||| | |||||||||| |||| |||| |||||| ||    
T  37714279 ctgtccaccctctctccgccatttccctcacagacgtccctttgtctagagtcaaatcaaaaaggcggggaaattgcacttttaaaggtggtcccccaac 37714180  T
Q  265 tgaattgtctaaccagaagtaagtac 290  Q
      | || ||||||||| |||||||||    
T  37714179 ccagttatctaaccagcagtaagtac 37714154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 140 - 359
Target Start/End: Original strand, 9741004 - 9741223
Alignment:
Q  140 ctccacacccatgcaccaccaccaacctcccaccctctctccgccatttccctcatagtcgcccctttgtctataatcaaatgaaaaatgcgagaaaatt 239  Q
    ||||||||||| ||||||||| |||    |||| |||||||| |||| |||||||  |  | ||| || |||| | ||| || ||||| ||| | |||||    
T  9741004 ctccacacccaggcaccaccatcaattgtccacgctctctcctccatctccctcactgaagtccccttatctagagtcagataaaaaaggcggggaaatt 9741103  T
Q  240 gcactcttaatggtgctccccccactgaattgtctaaccagaagtaagtactgctcccttcacccaccgccgtacgaatattatcttcaaaccaattctc 339  Q
    ||||| |||| ||||||||||| ||  |||| |||||||||||||||||| | |||||| |||||||| || | |||| ||| || ||||||||| ||||    
T  9741104 gcacttttaaaggtgctcccccaacccaattatctaaccagaagtaagtattcctccctccacccaccacccttcgaacattgtcatcaaaccaactctc 9741203  T
Q  340 cactcccacaccaacaccac 359  Q
    ||| |||| ||| |||||||    
T  9741204 cacccccaaacctacaccac 9741223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 370
Target Start/End: Complemental strand, 42052246 - 42051892
Alignment:
Q  17 taacctttgatagggtcaaggatccatcgccacatgtctgtattattttcctgcaaaacaaagtcagccagcaaacctgcacactccacaattgtctcct 116  Q
    |||||||||||||| ||||| | ||||| |||| ||||   | || | ||||||||||||| ||||| ||||||| | ||||||||  | |  |||||||    
T  42052246 taacctttgataggatcaagaacccatctccacctgtcaagagtaatgtcctgcaaaacaatgtcagacagcaaagccgcacactctgcgacagtctcct 42052147  T
Q  117 ctttccaagccaagaggcgccttctccacacccatgcaccaccaccaacctcccaccctctctccgccatttccctcatagtcgcccctttgtctataat 216  Q
    | |  |||||||| |||||| | ||||||||||| ||||||||| |||||  ||||||||||||| |||| |||||||  | || | | || |||| | |    
T  42052146 cctctcaagccaaaaggcgcatcctccacacccaggcaccaccatcaaccgtccaccctctctcctccatctccctcactgacgtctccttatctagagt 42052047  T
Q  217 caaatgaaaaatgcgagaaaattgcactctt-aatggtgctccccccactgaattgtctaaccagaagtaagtactgctcccttcacccaccgccgtacg 315  Q
    ||||| ||||| ||| | ||||| || | || || ||||||||||| ||  |||| |||||||| || |||||||| |||||| |||||||  || | ||    
T  42052046 caaataaaaaaggcggggaaatttcatttttaaaaggtgctcccccaacccaattatctaaccataaataagtactcctccctccacccactacccttcg 42051947  T
Q  316 aatattatcttcaaaccaattctccactcccacaccaacaccactacgaatacca 370  Q
     | ||| || ||||||||| ||||||| |||| ||| |||||||  |||||||||    
T  42051946 tacattgtcatcaaaccaactctccacccccaaacctacaccacatcgaatacca 42051892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 112 - 324
Target Start/End: Complemental strand, 43450138 - 43449926
Alignment:
Q  112 ctcctctttccaagccaagaggcgccttctccacacccatgcaccaccaccaacctcccaccctctctccgccatttccctcatagtcgcccctttgtct 211  Q
    |||||||| |||||| ||||||||||| |||||| |||| |||||||||||||| |||||||||||||| | |||  || |||  ||||||||||||| |    
T  43450138 ctcctcttcccaagctaagaggcgcctcctccacgcccaggcaccaccaccaacatcccaccctctctctgtcatccccttcactgtcgcccctttgttt 43450039  T
Q  212 ataatcaaatgaaaaatgcgagaaaattgcactcttaatggtgctccccccactgaattgtctaaccagaagtaagtactgctcccttcacccaccgccg 311  Q
     ||  ||| | ||||| |||   |||||||||||  || || ||||||||||   |||| |||||||  || ||||| || |||||| |||| ||| ||     
T  43450038 ttagacaattcaaaaaggcggagaaattgcactcgcaagggagctccccccaaccaattatctaacctaaaataagtgctactccctccaccaaccacct 43449939  T
Q  312 tacgaatattatc 324  Q
    |||||| ||||||    
T  43449938 tacgaacattatc 43449926  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 359
Target Start/End: Complemental strand, 32623044 - 32623004
Alignment:
Q  319 attatcttcaaaccaattctccactcccacaccaacaccac 359  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  32623044 attatcttcaaaccaattatccacccccacaccaacaccac 32623004  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 9678332 - 9678398
Alignment:
Q  112 ctcctctttccaagccaagaggcgccttctccacacccatgcaccaccaccaacctcccaccctctc 178  Q
    |||||| | |||||| ||||||||||  |||||||||||  |||||||||||||  |||||||||||    
T  9678332 ctcctcctcccaagctaagaggcgccacctccacacccagacaccaccaccaactacccaccctctc 9678398  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 33035788 - 33035853
Alignment:
Q  113 tcctctttccaagccaagaggcgccttctccacacccatgcaccaccaccaacctcccaccctctc 178  Q
    ||||||||||| ||||| || ||||| |||||| |||| || | |||||||||| |||||||||||    
T  33035788 tcctctttccatgccaaaagacgcctcctccactcccaagctctaccaccaaccccccaccctctc 33035853  T

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Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 26755621 - 26755444
Alignment:
Q  17 taacctttgatagggtcaaggatccatcgccacatgtctgtattattttcctgcaaaacaaagtcagccagcaaacctgcacactccacaattgtctcct 116  Q
    ||||||||||||||||| || | ||||| |||| ||||  || || | ||||||||||||| ||||| ||||||| |  |||||||| |||  | |||||    
T  26755621 taacctttgatagggtcgagaacccatctccacctgtcaataatagtgtcctgcaaaacaatgtcagacagcaaagccacacactccgcaacagactcct 26755522  T
Q  117 ctttccaagccaagaggcgccttctccacacccatgcaccaccaccaacctcccaccctctctccgccatttccctca 194  Q
    | | ||||||||| | |||||| ||||||||| | ||||||||| |||||  ||||||||||||| |||| |||||||    
T  26755521 cctcccaagccaaaaagcgcctcctccacaccaaggcaccaccatcaaccgaccaccctctctcctccatctccctca 26755444  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 35414383 - 35414480
Alignment:
Q  112 ctcctctttccaagccaagaggcgccttctccacacccatgcaccaccaccaacctcccaccctctctccgccatttccctcatagtcgcccctttgt 209  Q
    |||||||| ||| || || || ||||| ||||||||||| | ||| |||| ||| |||||||||||||| ||||| ||| |||  | |||||||||||    
T  35414383 ctcctcttcccacgctaaaagacgcctcctccacacccaggaacccccacaaacatcccaccctctctcagccatctccttcactgccgcccctttgt 35414480  T

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Target: scaffold0533 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 28 - 178
Target Start/End: Original strand, 127 - 277
Alignment:
Q  28 agggtcaaggatccatcgccacatgtctgtattattttcctgcaaaacaaagtcagccagcaaacctgcacactccacaattgtctcctctttccaagcc 127  Q
    ||||||||||||||| |||||| ||||  || ||| ||||||||||||||  | |  |||||||   | |||||||  ||  |||||||||| ||||||     
T  127 agggtcaaggatccaccgccacctgtcaatagtatgttcctgcaaaacaatattacacagcaaagacgaacactccgtaacagtctcctcttcccaagct 226  T
Q  128 aagaggcgccttctccacacccatgcaccaccaccaacctcccaccctctc 178  Q
    ||||||||||| |||||||||||  ||||||| ||||||||||||||||||    
T  227 aagaggcgcctcctccacacccagacaccacctccaacctcccaccctctc 277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 26586485 - 26586563
Alignment:
Q  123 aagccaagaggcgccttctccacacccatgcaccaccaccaacctcccaccctctctccgccatttccctcatagtcgc 201  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| |||| || |||| ||||||    
T  26586485 aagccaagaggcgccttctccacacccaggcaccaccaccaaccgcccaccctttctcctccatctctctcacagtcgc 26586563  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 359
Target Start/End: Original strand, 26586627 - 26586709
Alignment:
Q  277 ccagaagtaagtactgctcccttcacccaccgccgtacgaatattatcttcaaaccaattctccactcccacaccaacaccac 359  Q
    |||||||||||||||||| ||| | |||||  |   ||| || ||||||||||||||| ||||||| |||| |||||||||||    
T  26586627 ccagaagtaagtactgcttcctccgcccacaactcgacggatgttatcttcaaaccaactctccacccccaaaccaacaccac 26586709  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 112 - 356
Target Start/End: Original strand, 29002271 - 29002516
Alignment:
Q  112 ctcctctttccaagccaagaggcgccttctccacacccatgcaccaccacc-aacctcccaccctctctccgccatttccctcatagtcgcccctttgtc 210  Q
    |||||| | ||||||| | || ||||| ||||||||||| |||||||| || |||| |||||||||||||| |||| || ||||  | || | | || ||    
T  29002271 ctcctcctcccaagcccaaagacgcctcctccacacccaggcaccaccccccaaccgcccaccctctctcctccatctcgctcaccgacgtctccttatc 29002370  T
Q  211 tataatcaaatgaaaaatgcgagaaaattgcactcttaatggtgctccccccactgaattgtctaaccagaagtaagtactgctcccttcacccaccgcc 310  Q
    |  | ||| || ||||| | ||| |||||| ||| | || ||||||||||||||  |||| ||||||||||| |||||||| |||||| |||||||| ||    
T  29002371 ttgagtcagataaaaaaggtgaggaaattgtactttcaaaggtgctccccccacccaattatctaaccagaaataagtactcctccctccacccaccacc 29002470  T
Q  311 gtacgaatattatcttcaaaccaattctccactcccacaccaacac 356  Q
     |||| | ||| || |||||||||  |||||| ||||  |||||||    
T  29002471 ctacggacattgtcatcaaaccaaccctccacccccaagccaacac 29002516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 51072571 - 51072497
Alignment:
Q  112 ctcctctttccaagccaagaggcgccttctccacacccatgcaccaccaccaacctcccaccctctctccgccat 186  Q
    |||||||| ||| || || || ||||| ||||||||| | |||||||||||||| |||||||||||||| |||||    
T  51072571 ctcctcttcccaggctaaaagacgcctcctccacacctaggcaccaccaccaacatcccaccctctctcagccat 51072497  T

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Target: scaffold0309 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 1163 - 1066
Alignment:
Q  112 ctcctctttccaagccaagaggcgccttctccacacccatgcaccaccaccaacctcccaccctctctccgccatttccctcatagtcgcccctttgt 209  Q
    |||||||| ||| || || || ||||| ||||||||||||| ||| |||||||| |||||||||||||| ||||| ||| |||  |||||||||||||    
T  1163 ctcctcttcccacgctaaaagacgcctcctccacacccatgaacccccaccaacatcccaccctctctcagccatctccttcactgtcgcccctttgt 1066  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 190
Target Start/End: Original strand, 21415832 - 21415911
Alignment:
Q  111 tctcctctttccaagccaagaggcgccttctccacacccatgcaccaccaccaacctcccaccctctctccgccatttcc 190  Q
    ||||||| | |||||| ||||||||||| ||||||||||| ||||| || ||| ||||||||||| ||  ||||||||||    
T  21415832 tctcctcctcccaagcaaagaggcgcctcctccacacccaggcaccgcccccatcctcccaccctttcatcgccatttcc 21415911  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 12045596 - 12045531
Alignment:
Q  112 ctcctctttccaagccaagaggcgccttctccacacccatgcaccaccaccaacctcccaccctct 177  Q
    |||||| | ||||||||| |||||||| |||||| |||| |||||||||||| || |||| |||||    
T  12045596 ctcctcctcccaagccaaaaggcgcctcctccactcccaggcaccaccaccatccacccatcctct 12045531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 15175163 - 15175094
Alignment:
Q  115 ctctttccaagccaagaggcgccttctccacacccatgcaccaccaccaacctcccaccctctctccgcc 184  Q
    ||||| |||||| || ||| |||| ||||||  ||| |||||||| ||||| ||||||||||||||||||    
T  15175163 ctcttcccaagctaaaaggagcctcctccacttccaggcaccacctccaacttcccaccctctctccgcc 15175094  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 44440061 - 44440129
Alignment:
Q  112 ctcctctttccaagccaagaggcgccttctccacacccatgcaccaccaccaacctcccaccctctctc 180  Q
    |||||||| ||| || || || ||||||||||||||||  |||||||  ||||| ||||||||||||||    
T  44440061 ctcctcttcccaggctaaaagacgccttctccacaccctggcaccactgccaacatcccaccctctctc 44440129  T

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