View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17506_low_6 (Length: 264)
Name: NF17506_low_6
Description: NF17506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17506_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 27418800 - 27419049
Alignment:
| Q |
1 |
tcttgagatctggaaaaaactaacaataattgaagagttgtgataacattctcattgagggaacattttgtttccgtaggaatgattgatacatggaata |
100 |
Q |
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| T |
27418800 |
tcttgagatctggaaaaaactaaaaataattgaagagttgtgataacattatcattgagggaacattttgtttccgtaggaatgattgatacatggaaga |
27418899 |
T |
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| Q |
101 |
aacaaaatgnnnnnnnntattaataacagaaaaaattgtcatctgagcaaattagcctcaactaatctatctcaatctgtatccnnnnnnnnnnnnnntc |
200 |
Q |
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| T |
27418900 |
aacaaaatgaaaaaaaatattaataacagaaaaaattgtcatctgagcaaattagcctcaactaatctatcttaatctgtatccaaaaaaaataaaaatc |
27418999 |
T |
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| Q |
201 |
tatcttaatctccattagcatgatttacaaatcacttaagcgagaagtga |
250 |
Q |
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| T |
27419000 |
tatcttaatctccattagcatgatttacaaatcacttaagcgagaagtga |
27419049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 27421729 - 27421800
Alignment:
| Q |
38 |
ttgtgataacattctcattgagggaacattttgtttccgtaggaatgattgatacatggaataaacaaaatg |
109 |
Q |
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| T |
27421729 |
ttgtcatagcattctcattgagggaacattttgtttccataggaatgattgatacatggaagaaacaaaatg |
27421800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 27424312 - 27424376
Alignment:
| Q |
45 |
aacattctcattgagggaacattttgtttccgtaggaatgattgatacatggaataaacaaaatg |
109 |
Q |
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| T |
27424312 |
aacattctcattgagggaacattttgtttccgtaggaatgagtgttacatggcagaaacaaaatg |
27424376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 172
Target Start/End: Original strand, 27414100 - 27414234
Alignment:
| Q |
38 |
ttgtgataacattctcattgagggaacattttgtttccgtaggaatgattgatacatggaataaacaaaatgnnnnnnnntattaataacag-aaaaaat |
136 |
Q |
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|||| |||||||||||||| || ||||||||||||| |||||||||||| |||||||| | |||||||||| |||| ||||||| ||||||| |
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| T |
27414100 |
ttgtcataacattctcattaagctaacattttgtttctgtaggaatgattaatacatggcagaaacaaaatg-aaaaaaatattcataacagaaaaaaat |
27414198 |
T |
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| Q |
137 |
tgtcatctgagcaaattagcctcaactaatctatct |
172 |
Q |
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| T |
27414199 |
tgcattctgtgcaaattagcctcaactaatctatct |
27414234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 27411251 - 27411322
Alignment:
| Q |
37 |
gttgtgataacattctcattgagggaacattttgtttccgtaggaatgattgatacatggaataaacaaaatg |
109 |
Q |
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| T |
27411251 |
gttgtcataactttctcattaagggaacattttgtttctgtaggaatgattgatacat-gaagaaacaaaatg |
27411322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 178
Target Start/End: Complemental strand, 27567592 - 27567457
Alignment:
| Q |
44 |
taacattctcattgagggaacatt--ttgtttccgtaggaatgattgatacatggaataaacaaaatgnnnnnnnntattaataacagaaaaaattgtca |
141 |
Q |
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| T |
27567592 |
taacattctcattcaggaaacattccctatttccgcaggaatgattaatacatggaaaaaacaaaatg-aaaaaaatattcataatagaaaaaattgcgc |
27567494 |
T |
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| Q |
142 |
tctgagcaaattagcctcaactaatctatctcaatct |
178 |
Q |
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| T |
27567493 |
tctgtacaaattagcctcaactattctatctaaatct |
27567457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 27571960 - 27571913
Alignment:
| Q |
44 |
taacattctcattgagggaacattttg-tttccgtaggaatgattgat |
90 |
Q |
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| T |
27571960 |
taacattctcattcaggaaacattttgatttccgtaggaatgattgat |
27571913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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