View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17507_high_5 (Length: 417)
Name: NF17507_high_5
Description: NF17507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17507_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 26380384 - 26380762
Alignment:
| Q |
18 |
aggtaataatagtaataacaatcttgttgaatcattcactaacatgcctcgtttttgggaatctcatgcatacaacaacaacaataacaacgttgttgat |
117 |
Q |
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| T |
26380384 |
aggtaataatagtaataacaatcttgttgaaccattcactaacatgccttgtttttgggaatctcatgcatacaacaa------taacaacgttgttgat |
26380477 |
T |
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| Q |
118 |
gatgaaacagtaacagtaacacacccacgttaccaaaacatgggtg---gtggtggtagtccaaaagcctcaacttttggggtttcacaaaatccacaag |
214 |
Q |
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| T |
26380478 |
gatgaaacagtaacagtaacacacccacgttaccaaaacatgggtggtggtggtggtagtccaaaagcctcaacttttggggtttcacaaaatccacaag |
26380577 |
T |
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| Q |
215 |
gtttagtttctgaaaatatcaagtggggtatgcaaaaaggtcacacctttactggaatatctcaaatgggttcttctattgatcttggaaacaatgctcc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26380578 |
gtttagtttctgaaaatatcaagtggggtatgcaaaaaggtcacacctttactggaatatctcaaatgggttcttctattgatcttggaaacaatgttcc |
26380677 |
T |
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| Q |
315 |
ttatggtcatggagtttgttatggtagaggtagaggtagagttgttccggttcagctgcaaaacccgtctttttcttcgccttat |
399 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26380678 |
ttatggtaatggagtttgttatggtagaggtagaggtagagttgttccggttcagctgcaaaacccgtctttttcttcgccttat |
26380762 |
T |
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