View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17507_low_10 (Length: 288)

Name: NF17507_low_10
Description: NF17507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17507_low_10
NF17507_low_10
[»] chr8 (2 HSPs)
chr8 (121-272)||(41672077-41672228)
chr8 (74-115)||(38661075-38661116)
[»] chr2 (3 HSPs)
chr2 (11-117)||(14488766-14488872)
chr2 (74-117)||(6085702-6085745)
chr2 (74-117)||(36390961-36391004)
[»] chr4 (6 HSPs)
chr4 (74-114)||(55514355-55514395)
chr4 (74-109)||(47326790-47326825)
chr4 (74-109)||(47341586-47341621)
chr4 (74-116)||(41261127-41261169)
chr4 (52-114)||(39429232-39429294)
chr4 (74-114)||(30808628-30808668)
[»] chr5 (4 HSPs)
chr5 (74-108)||(4555390-4555424)
chr5 (74-115)||(26712389-26712430)
chr5 (74-115)||(26982127-26982168)
chr5 (74-115)||(35262458-35262499)
[»] chr1 (2 HSPs)
chr1 (74-116)||(30780985-30781027)
chr1 (74-115)||(45922238-45922279)
[»] chr6 (1 HSPs)
chr6 (78-115)||(16764931-16764968)
[»] chr3 (1 HSPs)
chr3 (74-115)||(17026890-17026931)


Alignment Details
Target: chr8 (Bit Score: 144; Significance: 9e-76; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 121 - 272
Target Start/End: Original strand, 41672077 - 41672228
Alignment:
Q  121 acatctaagtgcgaaaacatgttgaggatttgctaatgcgtcatgttccactgagacaattacttctttcgtggaaagatcacgaaaaggagaatgccat 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41672077 acatctaagtgcgaaaacatgttgaggatttgctaatgcgtcatgttccactgaaacaattacttctttcgtggaaagatcacgaaaaggagaatgccat 41672176  T
Q  221 caaatcatccaaatatgtaagcaggtgataatgcatcaattgaagatgagtg 272  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41672177 cgaatcatccaaatatgtaagcaggtgataatgcatcaattgaagatgagtg 41672228  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 38661075 - 38661116
Alignment:
Q  74 ctttcccatggtaggaaacaactttcctttcccatgttaaac 115  Q
    ||||||||||||||||||||| ||||| |||||| |||||||    
T  38661075 ctttcccatggtaggaaacaagtttccattcccaggttaaac 38661116  T

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Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 14488766 - 14488872
Alignment:
Q  11 caaaggaaaaaatatgatgcaggtagtccatcataaaatctttaatctaatggttgnnnnnnnctttcccatggtaggaaacaactttcctttcccatgt 110  Q
    |||||||||| ||||| |||||| ||||||| ||||||| ||||||||||||| ||       |||||||||||||| ||||||||||| ||||||||||    
T  14488766 caaaggaaaatatatggtgcaggcagtccatgataaaatatttaatctaatggctgaaaaaaactttcccatggtagaaaacaactttcatttcccatgt 14488865  T
Q  111 taaaccc 117  Q
    |||||||    
T  14488866 taaaccc 14488872  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 117
Target Start/End: Original strand, 6085702 - 6085745
Alignment:
Q  74 ctttcccatggtaggaaacaactttcctttcccatgttaaaccc 117  Q
    |||||||||||||||||||||||  ||||||||||| |||||||    
T  6085702 ctttcccatggtaggaaacaactcacctttcccatgctaaaccc 6085745  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 117
Target Start/End: Complemental strand, 36391004 - 36390961
Alignment:
Q  74 ctttcccatggtaggaaacaactttcctttcccatgttaaaccc 117  Q
    |||||||||||| ||||||||||| ||||||||||| |||||||    
T  36391004 ctttcccatggtgggaaacaacttccctttcccatgctaaaccc 36390961  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 55514355 - 55514395
Alignment:
Q  74 ctttcccatggtaggaaacaactttcctttcccatgttaaa 114  Q
    |||||||||||| ||||||||||||||||||||||| ||||    
T  55514355 ctttcccatggtgggaaacaactttcctttcccatgctaaa 55514395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 109
Target Start/End: Original strand, 47326790 - 47326825
Alignment:
Q  74 ctttcccatggtaggaaacaactttcctttcccatg 109  Q
    |||||||||||| |||||||||||||||||||||||    
T  47326790 ctttcccatggtgggaaacaactttcctttcccatg 47326825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 109
Target Start/End: Original strand, 47341586 - 47341621
Alignment:
Q  74 ctttcccatggtaggaaacaactttcctttcccatg 109  Q
    |||||||||||| |||||||||||||||||||||||    
T  47341586 ctttcccatggtgggaaacaactttcctttcccatg 47341621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 41261169 - 41261127
Alignment:
Q  74 ctttcccatggtaggaaacaactttcctttcccatgttaaacc 116  Q
    |||||||||||| | ||||||||||||||||||||| ||||||    
T  41261169 ctttcccatggtggaaaacaactttcctttcccatgctaaacc 41261127  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 39429294 - 39429232
Alignment:
Q  52 ttaatctaatggttgnnnnnnnctttcccatggtaggaaacaactttcctttcccatgttaaa 114  Q
    |||||||||||||||       ||||||||||||||||||||||| ||| |||||||| ||||    
T  39429294 ttaatctaatggttgaaaaaaactttcccatggtaggaaacaactctccattcccatgctaaa 39429232  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 30808668 - 30808628
Alignment:
Q  74 ctttcccatggtaggaaacaactttcctttcccatgttaaa 114  Q
    |||||||||||| |||||||||| ||||||||||| |||||    
T  30808668 ctttcccatggtgggaaacaactctcctttcccattttaaa 30808628  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 108
Target Start/End: Original strand, 4555390 - 4555424
Alignment:
Q  74 ctttcccatggtaggaaacaactttcctttcccat 108  Q
    |||||||||||||||||||||||| ||||||||||    
T  4555390 ctttcccatggtaggaaacaacttccctttcccat 4555424  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 26712389 - 26712430
Alignment:
Q  74 ctttcccatggtaggaaacaactttcctttcccatgttaaac 115  Q
    |||||||||||| ||||||||||| ||||||||||| |||||    
T  26712389 ctttcccatggtgggaaacaacttccctttcccatgctaaac 26712430  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 26982127 - 26982168
Alignment:
Q  74 ctttcccatggtaggaaacaactttcctttcccatgttaaac 115  Q
    |||||||||||| ||||||||||| ||||||||||| |||||    
T  26982127 ctttcccatggtgggaaacaacttccctttcccatgctaaac 26982168  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 35262499 - 35262458
Alignment:
Q  74 ctttcccatggtaggaaacaactttcctttcccatgttaaac 115  Q
    ||||||||||||||||||||| | |||||||||||| |||||    
T  35262499 ctttcccatggtaggaaacaattatcctttcccatgctaaac 35262458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 30780985 - 30781027
Alignment:
Q  74 ctttcccatggtaggaaacaactttcctttcccatgttaaacc 116  Q
    |||||||||| | |||||||||| |||||||||||||||||||    
T  30780985 ctttcccatgatgggaaacaactctcctttcccatgttaaacc 30781027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 45922279 - 45922238
Alignment:
Q  74 ctttcccatggtaggaaacaactttcctttcccatgttaaac 115  Q
    |||||||||||| ||||||||| | |||||||||||||||||    
T  45922279 ctttcccatggtgggaaacaacctccctttcccatgttaaac 45922238  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 16764968 - 16764931
Alignment:
Q  78 cccatggtaggaaacaactttcctttcccatgttaaac 115  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  16764968 cccatggtgggaaacaactttcctttcccatgctaaac 16764931  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 17026931 - 17026890
Alignment:
Q  74 ctttcccatggtaggaaacaactttcctttcccatgttaaac 115  Q
    |||||||||  | |||||||||||||||||||||||||||||    
T  17026931 ctttcccattatgggaaacaactttcctttcccatgttaaac 17026890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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