View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17507_low_2 (Length: 602)

Name: NF17507_low_2
Description: NF17507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17507_low_2
NF17507_low_2
[»] chr2 (3 HSPs)
chr2 (122-592)||(1701458-1701928)
chr2 (10-112)||(4593084-4593180)
chr2 (10-125)||(10256169-10256278)
[»] chr8 (3 HSPs)
chr8 (122-525)||(181031-181434)
chr8 (10-112)||(14791142-14791238)
chr8 (10-112)||(20111843-20111939)
[»] chr5 (3 HSPs)
chr5 (10-125)||(26380164-26380279)
chr5 (10-112)||(5348188-5348284)
chr5 (10-125)||(36429754-36429863)
[»] chr6 (4 HSPs)
chr6 (10-111)||(17732374-17732469)
chr6 (10-125)||(6008979-6009088)
chr6 (10-125)||(30709965-30710074)
chr6 (10-112)||(15347897-15347993)
[»] chr3 (3 HSPs)
chr3 (10-111)||(50837816-50837912)
chr3 (10-125)||(47471165-47471274)
chr3 (10-112)||(54560498-54560594)
[»] chr4 (4 HSPs)
chr4 (10-125)||(27455392-27455501)
chr4 (28-125)||(49681601-49681692)
chr4 (412-580)||(3541459-3541627)
chr4 (483-579)||(31098805-31098901)
[»] chr1 (2 HSPs)
chr1 (10-126)||(47445325-47445435)
chr1 (502-579)||(26592523-26592600)
[»] scaffold0102 (1 HSPs)
scaffold0102 (10-125)||(32824-32933)
[»] chr7 (2 HSPs)
chr7 (17-125)||(36067794-36067896)
chr7 (412-580)||(5400484-5400652)


Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 122 - 592
Target Start/End: Original strand, 1701458 - 1701928
Alignment:
Q  122 tcatatctgttaagaaattctgcaagtctaacaatacatatcttgaatttcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgat 221  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  1701458 tcatatatgttaagaaattctgcaagtctaacaatacatatcttgaatttcaccctacctttttctgtgtaaaggatcaggtcacgggggcgacgttgat 1701557  T
Q  222 gcgcggttcaagtaacagtgatctctacacctttcattatatgtctcaatatcaacccactactcttgcttccacctgctctgcctccccttctatatgg 321  Q
    |||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||    
T  1701558 gcgcggttcaagtaacagtgatctctacacctttcatcctaagtctcaatatcaacccactgctcttgcttccacctgctccgcctccccttctttatgg 1701657  T
Q  322 catgctcgtttcgggcatccctctttcagagttcttgcactaatgatgtctagttgtggcagttttaggaacttagaaaatnnnnnnnttcattgtaatt 421  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| |||||||||       ||||||||||||    
T  1701658 catgctcgtttcggtcatccctctttcagagttcttgcacaaatgatgtctacttgtggcaattttaggaatttagaaaataaaaaatttcattgtaatt 1701757  T
Q  422 cttgtcatattaataaaagtcataagcttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgtttggggaccttc 521  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||    
T  1701758 cttgccatattaataaaagtcataagcttcctttttctgtttcttctatcaaaaccacagctcctcttgaactgttattttctgatgtttggggaccctc 1701857  T
Q  522 tcctatcacttcagttaatggttacaaatattatcttgtgtttgttgatcattttactcaatattcttgga 592  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1701858 tcctatcacttcagttcatggttacaaatattatcttgtgtttgttgatcattttactcgatattcttgga 1701928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 4593084 - 4593180
Alignment:
Q  10 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 109  Q
    |||||||||||||||||| |||||| |||||||||||||||||||      ||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  4593084 catcatcactcatgtctcctcttcataatcaatcactttttaacc------ctcattcaaatgaatttcctttttggagcagcgatgagattatcaacaa 4593177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 10256169 - 10256278
Alignment:
Q  10 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 109  Q
    |||||||||||||||||| |||| ||||||||||||||| |||||      ||||||||||||| ||||| |||||||| ||||||||||||| ||||||    
T  10256169 catcatcactcatgtctcctcttgagaatcaatcactttctaacc------ctcattcaaatggatttccattttggagcagcgatgagattaccaacaa 10256262  T
Q  110 caacaatgatcatcat 125  Q
    |||  || ||||||||    
T  10256263 caatgatcatcatcat 10256278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 122 - 525
Target Start/End: Original strand, 181031 - 181434
Alignment:
Q  122 tcatatctgttaagaaattctgcaagtctaacaatacatatcttgaatttcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgat 221  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  181031 tcatatatgttaagaaattctgcaagtctaacaatacatatcttgaattgcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgat 181130  T
Q  222 gcgcggttcaagtaacagtgatctctacacctttcattatatgtctcaatatcaacccactactcttgcttccacctgctctgcctccccttctatatgg 321  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||    
T  181131 gcgcggttccagtaacagtgatctctacacctttcattatatgtctcaatatcaacccactgctcttgcttccacttgctctgcctcaccttctatatgg 181230  T
Q  322 catgctcgtttcgggcatccctctttcagagttcttgcactaatgatgtctagttgtggcagttttaggaacttagaaaatnnnnnnnttcattgtaatt 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||       ||||||||||||    
T  181231 catgctcgtttcgggcatccctctttcagagttcttgcactaatgatgtctagttgtggcaattttaggaacttagaaaataaaaaatttcattgtaatt 181330  T
Q  422 cttgtcatattaataaaagtcataagcttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgtttggggaccttc 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  181331 cttgtcatattaataaaagtcataagcttcctttttcagtttcttctatcaaaaccgcagctcctcttgaactgttattttctgatgtttggggaccttc 181430  T
Q  522 tcct 525  Q
    ||||    
T  181431 tcct 181434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 14791142 - 14791238
Alignment:
Q  10 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 109  Q
    |||||||||||||||||| ||||||||||||||||||||||||||      ||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  14791142 catcatcactcatgtctcctcttcagaatcaatcactttttaacc------ctcattcaaatggatttcctttttggagcagcgatgagattatcaacaa 14791235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 10 - 112
Target Start/End: Complemental strand, 20111939 - 20111843
Alignment:
Q  10 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 109  Q
    ||||||||||||||||||||||||| |||||||||||||||||||      ||||||||||||| ||| |||||||||| ||||||||||||| ||||||    
T  20111939 catcatcactcatgtctcatcttcaaaatcaatcactttttaacc------ctcattcaaatggattttctttttggagcagcgatgagattaccaacaa 20111846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 5e-42; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 26380164 - 26380279
Alignment:
Q  10 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 109  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  26380164 catcatcactcatgtctcatcttcagaatcaatcaatctttaaccctcaggctcattcaaatgggtttcctttttggagcagcgatgagattatcaataa 26380263  T
Q  110 caacaatgatcatcat 125  Q
    |||  || ||||||||    
T  26380264 caatgatcatcatcat 26380279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 5348188 - 5348284
Alignment:
Q  10 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 109  Q
    |||||||||||||||||| ||||||||||||||||||||||||||      ||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  5348188 catcatcactcatgtctcctcttcagaatcaatcactttttaacc------ctcattcaaatggatttcctttttggagcagcgatgagattatcaacaa 5348281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 36429754 - 36429863
Alignment:
Q  10 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 109  Q
    |||||||||||||||||| ||||||||||||||||||||||||||      ||||||||||||| |||| ||||||||| ||||||||||||| ||||||    
T  36429754 catcatcactcatgtctcctcttcagaatcaatcactttttaacc------ctcattcaaatggatttcttttttggagcagcgatgagattaccaacaa 36429847  T
Q  110 caacaatgatcatcat 125  Q
    |||  || ||||||||    
T  36429848 caatgatcatcatcat 36429863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 17732469 - 17732374
Alignment:
Q  10 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 109  Q
    |||||||||||||||||| ||||||||||||||||||||||||||      ||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  17732469 catcatcactcatgtctcctcttcagaatcaatcactttttaacc------ctcattcaaatggatttcctttttggagcagcgatgagattatcaacaa 17732376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 10 - 125
Target Start/End: Complemental strand, 6009088 - 6008979
Alignment:
Q  10 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 109  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||      ||||||||| |||||||||||||| ||||||||||||||||||||    
T  6009088 catcatcactcatgtctcctcttcagaatcaatcacttttgaaccctca------ttcaaatggatttcctttttggagcagcgatgagattatcaacaa 6008995  T
Q  110 caacaatgatcatcat 125  Q
    |||  || ||||||||    
T  6008994 caatgatcatcatcat 6008979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 30709965 - 30710074
Alignment:
Q  10 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 109  Q
    |||||||||||||||||| ||||||||||||||||||||||||||      ||||||||||||| |||| ||||||||| ||||||||||||| ||||||    
T  30709965 catcatcactcatgtctcctcttcagaatcaatcactttttaacc------ctcattcaaatggatttcttttttggagcagcgatgagattaccaacaa 30710058  T
Q  110 caacaatgatcatcat 125  Q
    |||  || ||||||||    
T  30710059 caatgatcatcatcat 30710074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 15347897 - 15347993
Alignment:
Q  10 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 109  Q
    |||||||||||||||||| |||| |||||||||||||||||||||      ||||||||||||| ||||| |||||||| ||||||||||||||||||||    
T  15347897 catcatcactcatgtctcctctttagaatcaatcactttttaacc------ctcattcaaatggatttccattttggagcagcgatgagattatcaacaa 15347990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 7e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 50837912 - 50837816
Alignment:
Q  10 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 109  Q
    |||||||||||||||||| |||||||||||||||||||||||||||     ||||||||||||| |||||||||||||| |||||||| |||||||||||    
T  50837912 catcatcactcatgtctcctcttcagaatcaatcactttttaaccc-----ctcattcaaatggatttcctttttggagcagcgatgaaattatcaacaa 50837818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 47471165 - 47471274
Alignment:
Q  10 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 109  Q
    |||||||||||||||||| ||||||||||||||||||||||||||      ||||||||||||| |||||||||||||| ||||||||||||| ||||||    
T  47471165 catcatcactcatgtctcctcttcagaatcaatcactttttaacc------ctcattcaaatggatttcctttttggagcagcgatgagattaccaacaa 47471258  T
Q  110 caacaatgatcatcat 125  Q
    |||  || ||||||||    
T  47471259 caatgatcatcatcat 47471274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 54560498 - 54560594
Alignment:
Q  10 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 109  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||      ||||||||| |||||||||||||| ||||||||||||||||||||    
T  54560498 catcatcactcatgtctcctcttcataatcaatcactttttaaccctca------ttcaaatggatttcctttttggagcagcgatgagattatcaacaa 54560591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 7e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 27455392 - 27455501
Alignment:
Q  10 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 109  Q
    |||||||||||||||||| |||||||||| |||||||||||||||      ||||||||||||| |||||||||||||| ||||||||||||| ||||||    
T  27455392 catcatcactcatgtctcctcttcagaataaatcactttttaacc------ctcattcaaatggatttcctttttggagcagcgatgagattaccaacaa 27455485  T
Q  110 caacaatgatcatcat 125  Q
    |||  || ||||||||    
T  27455486 caatgatcatcatcat 27455501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 49681692 - 49681601
Alignment:
Q  28 atcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaacaacaatgatcatcat 125  Q
    ||||| |||||||||||||||||||||||||      |||||||||||||||||||||||| |||||||||||||||||||||||  || ||||||||    
T  49681692 atctttagaatcaatcactttttaaccctca------ttcaaatgggtttcctttttggagcagcgatgagattatcaacaacaatgatcatcatcat 49681601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 412 - 580
Target Start/End: Original strand, 3541459 - 3541627
Alignment:
Q  412 cattgtaattcttgtcatattaataaaagtcataagcttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgttt 511  Q
    ||||||||||| ||   |||||||||||||||||| |||||||||||  | ||||| ||  ||||  |  ||||  |||||||  | || ||||||||||    
T  3541459 cattgtaattcctgctctattaataaaagtcataaacttcctttttctatatcttcaatacaaactttctctccatttgaactcattttctctgatgttt 3541558  T
Q  512 ggggaccttctcctatcacttcagttaatggttacaaatattatcttgtgtttgttgatcattttactc 580  Q
    ||||||| || ||||| || ||  | ||||||||||| ||||||||||| |||||||| ||||| ||||    
T  3541559 ggggaccatcccctataacgtccatcaatggttacaagtattatcttgtctttgttgaccatttcactc 3541627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 483 - 579
Target Start/End: Original strand, 31098805 - 31098901
Alignment:
Q  483 tcctcttgaactgttattttctgatgtttggggaccttctcctatcacttcagttaatggttacaaatattatcttgtgtttgttgatcattttact 579  Q
    ||||||||||||  | ||||||||||||||| |||| ||||| || |   |  | | ||| |||||||||||||||||||| |||||||||||||||    
T  31098805 tcctcttgaactcattttttctgatgtttggagaccctctccaattaacactatcagtggatacaaatattatcttgtgttcgttgatcattttact 31098901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 10 - 126
Target Start/End: Complemental strand, 47445435 - 47445325
Alignment:
Q  10 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 109  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||      ||||||||||||| |||||||||||||| | ||||||||||| ||||||    
T  47445435 catcaccactcatgtctcctcttcagaatcaatcactttttaacc------ctcattcaaatggatttcctttttggagcaacgatgagattaccaacaa 47445342  T
Q  110 caacaatgatcatcata 126  Q
    |||  || |||||||||    
T  47445341 caatgatcatcatcata 47445325  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 502 - 579
Target Start/End: Complemental strand, 26592600 - 26592523
Alignment:
Q  502 tctgatgtttggggaccttctcctatcacttcagttaatggttacaaatattatcttgtgtttgttgatcattttact 579  Q
    ||||||||||||||||| || ||||| || ||  |||||||||| | ||| ||||||||||||||||| || ||||||    
T  26592600 tctgatgtttggggaccatcccctataacatccattaatggttatagatactatcttgtgtttgttgaccactttact 26592523  T

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Target: scaffold0102 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 32824 - 32933
Alignment:
Q  10 catcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaa 109  Q
    |||||||||||||||||| | ||||||||||||||||||||||||      ||||||||||||| |||||||||||||| || |||||||||| ||||||    
T  32824 catcatcactcatgtctccttttcagaatcaatcactttttaacc------ctcattcaaatggatttcctttttggagcagtgatgagattaccaacaa 32917  T
Q  110 caacaatgatcatcat 125  Q
    |||  || ||||||||    
T  32918 caatgatcatcatcat 32933  T

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Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 36067794 - 36067896
Alignment:
Q  17 actcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaacaacaat 116  Q
    ||||||||||| |||||| |||||||||||||||||| ||||      ||||||||| |||||||||||||| |||||||||||||||||||||||  ||    
T  36067794 actcatgtctcctcttcaaaatcaatcactttttaactctca------ttcaaatggatttcctttttggagcagcgatgagattatcaacaacaatgat 36067887  T
Q  117 gatcatcat 125  Q
     ||||||||    
T  36067888 catcatcat 36067896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 412 - 580
Target Start/End: Original strand, 5400484 - 5400652
Alignment:
Q  412 cattgtaattcttgtcatattaataaaagtcataagcttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgttt 511  Q
    ||||||||||| ||   |||||||||||||||||| |||||||||||  | ||||| ||  ||||  |  ||||  |||||||  | || ||||||||||    
T  5400484 cattgtaattcctgctctattaataaaagtcataaacttcctttttctatatcttcaatacaaactttctctccatttgaactcattttctctgatgttt 5400583  T
Q  512 ggggaccttctcctatcacttcagttaatggttacaaatattatcttgtgtttgttgatcattttactc 580  Q
    ||||||| || ||||| || ||  ||||||||||||  ||||||||||| |||||||| ||||| ||||    
T  5400584 ggggaccatcccctataacgtccattaatggttacaggtattatcttgtctttgttgaccatttcactc 5400652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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