View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17507_low_3 (Length: 476)
Name: NF17507_low_3
Description: NF17507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17507_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 16 - 459
Target Start/End: Original strand, 39169970 - 39170409
Alignment:
| Q |
16 |
atccaaaacacatttcctatggtactcgtaaggatgagtagccatctagggtttaatatattcatatttaaatatttatttaatgatataatttcttgaa |
115 |
Q |
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| T |
39169970 |
atccaaaacacatttcctatggtactcgtaaggatgagtagccatctagggtttaatatattcatatttaaatatttatttaatgatataatttcttgaa |
39170069 |
T |
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| Q |
116 |
tactcctctaataatatgaatttaatttgtcaatatataattaatcttttaattttatggaacaaatgtgtatgaataaaacttttgaaaaatgattttt |
215 |
Q |
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| T |
39170070 |
tactcctctaataatatgaatttaatttgtcaata----attaatcttttaattttatggaacaaatgtgcatgaataaaacttttgaaaaatgattttt |
39170165 |
T |
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| Q |
216 |
ccatgagattaagatattaatcataattaatttttcttaaaatcaaaatcataaggagtacctggtaagctttgatgaggggaaggtcaatgatggaggg |
315 |
Q |
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| T |
39170166 |
ccatgagattaagatattaatcataattaatttttcttaaaatcaaaatcataaggagtacctggtaagctttgatgaggggaaggtcaatgatggaggg |
39170265 |
T |
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| Q |
316 |
gttgttggcttgaatcccagatatggattgaagaagtcctagattgtgtagagagtgtctcactttaatagaagcaaaagagtcattagtgagcaagaga |
415 |
Q |
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| T |
39170266 |
gttgttggcttgaatcccagatatggattgaagaagtcctagattgtgtagagagtgtctcactttaatagaagcaaaagagtcattagtgagcaagaga |
39170365 |
T |
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| Q |
416 |
agtggccaagtgagcctaacacagttgaaacccatagattttat |
459 |
Q |
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| T |
39170366 |
agtggccaagtgagcctaacacagttgaaacccatggattttat |
39170409 |
T |
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