View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17507_low_4 (Length: 418)
Name: NF17507_low_4
Description: NF17507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17507_low_4 |
 | |
|
| [»] scaffold0400 (2 HSPs) |
| | |
|
| [»] scaffold0365 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 15016034 - 15015634
Alignment:
| Q |
1 |
gaacaacgccgtacaggaagttgtttcttaaaactaaggtacggatttttggaagtgatgagaaattgagactttgaagtgtaccttttagtccaatatt |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15016034 |
gaacaatgccgtacaggaagttgtttcttaaaactaaggtacggatttttggaagtgatgagaaattgagactttgaagtgtaccttttagtccaatatt |
15015935 |
T |
|
| Q |
101 |
ggtgagatttaccttgttgatggattttgaatcatcatcacatgtgattccttcccagctactacaaggattattaccaatccatgaagagagtaatgct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15015934 |
ggtgagatttaccttgttgatggattttgaatcatcatcacatgtgattccttcccagctactacaaggattattaccaatccatgaagagagtaatgct |
15015835 |
T |
|
| Q |
201 |
ttgctttggttgtcaaagctttctttccacttcaacagagactctgcctcacggcctttgatttttgttgcagcatgaggtgatgtgatcattacaaaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15015834 |
ttgctttggttgtcaaagctttctttccacttcaacagagactctgcctcacggcctttgatttttgttgcagcatgaggtgatttgatcattacaaaca |
15015735 |
T |
|
| Q |
301 |
cataaaagaacaaaagaagacacgacattggtattggcaatttgaacacaattaaggtattggcaatcacaatcaattaaagtataatttgatttgaacg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15015734 |
cataaaagaacaaaagaagacacgacattggtattggcaatttgaacacaattaaggtattggcaatcacaatcaattaaagtataatttgatttgaacg |
15015635 |
T |
|
| Q |
401 |
c |
401 |
Q |
| |
|
| |
|
|
| T |
15015634 |
c |
15015634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 51 - 333
Target Start/End: Complemental strand, 15035457 - 15035175
Alignment:
| Q |
51 |
ggaagtgatgagaaattgagactttgaagtgtaccttttagtccaatattggtgagatttaccttgttgatggattttgaatcatcatcacatgtgattc |
150 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15035457 |
ggaagtgatgagaaattgagagtttgaagcgtaccttttagtccaatattggtgagatttaccttgttgatggattttgaatcatcatcacatgtgattc |
15035358 |
T |
|
| Q |
151 |
cttcccagctactacaaggattattaccaatccatgaagagagtaatgctttgctttggttgtcaaagctttctttccacttcaacagagactctgcctc |
250 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||| || | |||||||||| |||| |||||||||||||||||| |||||||| |
|
|
| T |
15035357 |
cttcccaactactacaaggattattaccaatccatgaagagagcaatgccctgttgtggttgtcaaggcttgctttccacttcaacagagcatctgcctc |
15035258 |
T |
|
| Q |
251 |
acggcctttgatttttgttgcagcatgaggtgatgtgatcattacaaacacataaaagaacaaaagaagacacgacattggta |
333 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
15035257 |
actgcctttgatttttgttgcagcatgaggtgatgtggcaattacatacacatagaagaacaaaagaagacacgacattggta |
15035175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 43 - 323
Target Start/End: Complemental strand, 14466035 - 14465755
Alignment:
| Q |
43 |
ggatttttggaagtgatgagaaattgagactttgaagtgtaccttttagtccaatattggtgagatttaccttgttgatggattttgaatcatcatcaca |
142 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||| |
|
|
| T |
14466035 |
ggatttttggaagtgatgagaaattgagagtttgaagcgtaccttttagtccaatattggtgagatttaccttgtagattgattttgattcatcatcaca |
14465936 |
T |
|
| Q |
143 |
tgtgattccttcccagctactacaaggattattaccaatccatgaagagagtaatgctttgctttggttgtcaaagctttctttccacttcaacagagac |
242 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14465935 |
tgtgattccttcccaactactacaaggattattaccaatccatgaagagagtagtgtcttgctttggttgtcaaagcttgctttccacttcaacagagca |
14465836 |
T |
|
| Q |
243 |
tctgcctcacggcctttgatttttgttgcagcatgaggtgatgtgatcattacaaacacataaaagaacaaaagaagacac |
323 |
Q |
| |
|
|||| ||||| || ||||||||||||||||| ||||| ||||||| ||| ||||||||||| ||||||| |||||||||| |
|
|
| T |
14465835 |
tctgtctcactgcttttgatttttgttgcagtatgagatgatgtggccataacaaacacatagaagaacacaagaagacac |
14465755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 14502163 - 14501852
Alignment:
| Q |
19 |
agttgtttcttaaaactaaggtacggatttttggaagtgatgagaaattgagactttgaagtgtaccttttagtccaatattggtgagatttaccttgtt |
118 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14502163 |
agttgttttttaaaactaaggtgcggatttttggaagtgatgataaattgagactttgaagcgtaccttttagtccaatatcagtgagatttaccttgtt |
14502064 |
T |
|
| Q |
119 |
gatggattttgaatcatcatcacatgtgattccttcccagctactacaaggattattaccaatccatgaagagagtaatgctttgctttggttgtcaaag |
218 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||| || ||||| | || | |||||||| | |
|
|
| T |
14502063 |
gatggattttgaatcattatcacatgtgattccttccca---actacaaggattattaccattccatgaagaaagcaatgccctactgttgttgtcaagg |
14501967 |
T |
|
| Q |
219 |
ctttctttccacttcaacagagactctgcctcacggcctttgatttttgttgcagcatgaggtgatgtgatcattacaaacacataaaagaacaaaagaa |
318 |
Q |
| |
|
||| |||||||||||||||||| || ||||| | |||| |||| |||||||||||||||||||||| |||||||||||||| |||||||||| || |
|
|
| T |
14501966 |
cttgctttccacttcaacagagcatcagcctcgctaccttggattattgttgcagcatgaggtgatgttgcaattacaaacacatagaagaacaaaataa |
14501867 |
T |
|
| Q |
319 |
gacacgacattggta |
333 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
14501866 |
gacacgacattggta |
14501852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 15009631 - 15009302
Alignment:
| Q |
1 |
gaacaacgccgtacaggaagttgtttcttaaaactaaggtacggatttttggaagtgatgagaaattgagactttgaagtgtaccttttagtccaatatt |
100 |
Q |
| |
|
||||||| ||||||| |||||||||| |||||||||| || |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
15009631 |
gaacaactccgtacaagaagttgtttgttaaaactaaagtgtggatttttggaagtgatgagaagttgagactctgaagtgtaccttttagtccaatatt |
15009532 |
T |
|
| Q |
101 |
ggtgagatttaccttgttgatggattttgaatcatcatcacatgtgattccttcccagctactacaaggattattaccaatccatgaagagagtaatgct |
200 |
Q |
| |
|
|||||||||||||||||||||||| || || |||| |||||| |||||||||||||| || |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15009531 |
ggtgagatttaccttgttgatggacttcgattcataatcacacgtgattccttccca---accacaaggattattaccaatccatgaagagagaaatgcc |
15009435 |
T |
|
| Q |
201 |
ttgctttggttgtcaaagctttctttccacttcaacagagactctgcctcacggcctttgatttttgttgcagcatgaggtgatgtgatcattacaaaca |
300 |
Q |
| |
|
|||| |||||||||| |||| |||||||||||| |||| || ||||| | |||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15009434 |
ctgctatggttgtcaaggcttgatttccacttcaatagagcatcagcctcgctaccttggatttttgttgcagcatgaggtgatgttgcaattacaaaca |
15009335 |
T |
|
| Q |
301 |
cataaaagaacaaaagaagacacgacattggta |
333 |
Q |
| |
|
|||| |||||||||| |||||| | |||||||| |
|
|
| T |
15009334 |
catagaagaacaaaataagacatggcattggta |
15009302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 15030729 - 15030400
Alignment:
| Q |
1 |
gaacaacgccgtacaggaagttgtttcttaaaactaaggtacggatttttggaagtgatgagaaattgagactttgaagtgtaccttttagtccaatatt |
100 |
Q |
| |
|
||||||| ||||||| |||||||||| |||||||||| || |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
15030729 |
gaacaactccgtacaagaagttgtttgttaaaactaaagtgtggatttttggaagtgatgagaagttgagactctgaagtgtaccttttagtccaatatt |
15030630 |
T |
|
| Q |
101 |
ggtgagatttaccttgttgatggattttgaatcatcatcacatgtgattccttcccagctactacaaggattattaccaatccatgaagagagtaatgct |
200 |
Q |
| |
|
|||||||||||||||||||||||| || || |||| |||||| |||||||||||||| || |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15030629 |
ggtgagatttaccttgttgatggacttcgattcataatcacacgtgattccttccca---accacaaggattattaccaatccatgaagagagaaatgcc |
15030533 |
T |
|
| Q |
201 |
ttgctttggttgtcaaagctttctttccacttcaacagagactctgcctcacggcctttgatttttgttgcagcatgaggtgatgtgatcattacaaaca |
300 |
Q |
| |
|
|||| |||||||||| |||| |||||||||||| |||| || ||||| | |||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15030532 |
ctgctatggttgtcaaggcttgatttccacttcaatagagcatcagcctcgctaccttggatttttgttgcagcatgaggtgatgttgcaattacaaaca |
15030433 |
T |
|
| Q |
301 |
cataaaagaacaaaagaagacacgacattggta |
333 |
Q |
| |
|
|||| |||||||||| |||||| | |||||||| |
|
|
| T |
15030432 |
catagaagaacaaaataagacatggcattggta |
15030400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 15001028 - 15000690
Alignment:
| Q |
1 |
gaacaacgccgtacaggaagttgtttcttaaaactaaggtacggatttttggaagtgatgagaaattgagactttgaagtgtaccttttagtccaatatt |
100 |
Q |
| |
|
||||||| |||| || |||||||||| ||||||||||||| ||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
15001028 |
gaacaactccgtgcaagaagttgtttgttaaaactaaggtgtggatttttgtaagtgatgagaaattgagagtttgaagcgtaccttttagtccaatatt |
15000929 |
T |
|
| Q |
101 |
ggtgagatttaccttgttgatggattttgaatcatcatcacatgtgattccttcccagctactacaaggattattaccaatccatgaagagagtaatgct |
200 |
Q |
| |
|
||||||||||| | |||||||||||||||| | || |||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
15000928 |
ggtgagatttatcatgttgatggattttgattgataatcacacgtgattccttcccaactactacaaggattattgccaatccatgaagagagcaatgcc |
15000829 |
T |
|
| Q |
201 |
ttgctttggttgtcaaagctttctttccacttcaacagagactctgcctcacggcctttgatttttgttgcagcatgaggtgatgt-gat-----catta |
294 |
Q |
| |
|
|||| |||||||||| |||| | ||||| |||||||||| || |||||| |||| | ||||| ||||||||||||||||||| ||| |||| |
|
|
| T |
15000828 |
ctgctgtggttgtcaaggcttgccttccatttcaacagagcatcaacctcactaccttggttttttcttgcagcatgaggtgatgtggatgtggcaatta |
15000729 |
T |
|
| Q |
295 |
caaacacataaaagaacaaaagaagacacgacattggta |
333 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
15000728 |
caaacacatagaagaacaaaataagacacgacattggta |
15000690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 14534586 - 14534902
Alignment:
| Q |
1 |
gaacaacgccgtacaggaagttgtttcttaaaactaaggtacggatttttggaagtgatgagaaattgagactttgaagtgtaccttttagtccaatatt |
100 |
Q |
| |
|
||||||| ||||||| |||||||||| |||||||||| || ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
14534586 |
gaacaactccgtacaagaagttgtttgttaaaactaaagtgtggatttttgtaagtgatgagaaattgagactttgaagcgtaccttttagtccaatatc |
14534685 |
T |
|
| Q |
101 |
ggtgagatttaccttgttgatggattttgaatcatcatcacatgtgattccttcccagctactacaaggattattaccaatccatgaagagagtaatgct |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||| | || |||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| || || |
|
|
| T |
14534686 |
agtgagatttaccttgttgatggactttgatttataatcacacgtgattccttcccaactactacaaggattattgccaatccatgaagagagcaaagca |
14534785 |
T |
|
| Q |
201 |
ttgctttggttgtcaaagctttctttccacttcaacagagactctgcctcacggcctttgatttttgttgcagcatgaggtgatgtgatcattacaaaca |
300 |
Q |
| |
|
||||| |||||||||| |||| |||||||||||||||||| || ||||| | ||||| | ||||||||||||| ||| |||| ||| ||||||| |
|
|
| T |
14534786 |
ttgctatggttgtcaaggcttgctttccacttcaacagagcatcagcctcgctgccttggtcatttgttgcagcataagg---tgtggccatgacaaaca |
14534882 |
T |
|
| Q |
301 |
cataaaagaacaaaagaaga |
320 |
Q |
| |
|
|| | ||||||||||||||| |
|
|
| T |
14534883 |
caaagaagaacaaaagaaga |
14534902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 15023730 - 15023419
Alignment:
| Q |
19 |
agttgtttcttaaaactaaggtacggatttttggaagtgatgagaaattgagactttgaagtgtaccttttagtccaatattggtgagatttaccttgtt |
118 |
Q |
| |
|
|||||||| ||||||||||||| | ||||| ||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
15023730 |
agttgtttgttaaaactaaggtgtgtattttcggaagtgatgagaaattgagactttgaagagtaccgtttaatccaatattggtgagatttaccttgtt |
15023631 |
T |
|
| Q |
119 |
gatggattttgaatcatcatcacatgtgattccttcccagctactacaaggattattaccaatccatgaagagagtaatgctttgctttggttgtcaaag |
218 |
Q |
| |
|
|||||| || || |||| |||||| |||||||||||||| || |||||||||||||||||||||||||||||| ||||| |||| |||||||||| | |
|
|
| T |
15023630 |
gatggacttcgattcataatcacacgtgattccttccca---accacaaggattattaccaatccatgaagagagaaatgccctgctatggttgtcaagg |
15023534 |
T |
|
| Q |
219 |
ctttctttccacttcaacagagactctgcctcacggcctttgatttttgttgcagcatgaggtgatgtgatcattacaaacacataaaagaacaaaagaa |
318 |
Q |
| |
|
||| |||||||||||| |||| || ||||| | |||| ||||||||||||||||||||||||||| ||||||||||| || |||||||||| || |
|
|
| T |
15023533 |
cttgttttccacttcaatagagcatcagcctcgctaccttggatttttgttgcagcatgaggtgatgttgcaattacaaacacttagaagaacaaaataa |
15023434 |
T |
|
| Q |
319 |
gacacgacattggta |
333 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
15023433 |
gacatgacattggta |
15023419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 17 - 319
Target Start/End: Complemental strand, 14480968 - 14480654
Alignment:
| Q |
17 |
gaagttgtttcttaaaactaaggtacggatttttggaagtgatgagaaattgagactttgaagtgtaccttttagtccaatattggtgagatttaccttg |
116 |
Q |
| |
|
|||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| || |||| |
|
|
| T |
14480968 |
gaagttgtttctcaaaactaatttttggatttttggaagtgatgagaaattgagactttgaagtgtaccttttagttcaaaactggtgagatctatcttg |
14480869 |
T |
|
| Q |
117 |
ttgatggattttgaatcatcatcacatgtgattccttcccagct------------actacaaggattattaccaatccatgaagagagtaatgctttgc |
204 |
Q |
| |
|
|| || |||||||| | || ||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||| | | |||| |
|
|
| T |
14480868 |
ttaatagattttgagttattatcacatatgattccttcccaacttagtccaatactactacaaggattattaccaatccatgaagagagtatttccttgc |
14480769 |
T |
|
| Q |
205 |
tttggttgtcaaagctttctttccacttcaacagagactctgcctcacggcctttgatttttgttgcagcatgaggtgatgtgatcattacaaacacata |
304 |
Q |
| |
|
|||| |||||||||||| |||||||||| || |||| |||||||| ||||| | |||||| |||||||||||||||| | ||||||||||||| | |
|
|
| T |
14480768 |
tttgtttgtcaaagcttgctttccactttaaaagagcatctgcctcgttgccttggttttttgcatcagcatgaggtgatgtaaccattacaaacacaca |
14480669 |
T |
|
| Q |
305 |
aaagaacaaaagaag |
319 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
14480668 |
aaagaacaaaagaag |
14480654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 14524627 - 14524920
Alignment:
| Q |
19 |
agttgtttcttaaaactaaggtacggatttttggaagtgatgagaaattgagactttgaagtgtaccttttagtccaatattggtgagatttaccttgtt |
118 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| | | |||| || ||||| |
|
|
| T |
14524627 |
agttgtttcttaaaactaagctatggatttttggaagtgatgagatattgagattttgaagtgtaccttttagtccaatacttgcaagatgtatcttgta |
14524726 |
T |
|
| Q |
119 |
gatggattttgaatcatcatcacatgtgattccttcccagctactacaaggattattaccaatccatgaagagagtaatgctttgctttggttgtcaaag |
218 |
Q |
| |
|
||| |||||||| | |||||||||||||||| |||| | | ||||| ||||||||||||||||||||||| || | |||||||||||||||||| |
|
|
| T |
14524727 |
gatagattttgacttgccatcacatgtgattcccaccca---attgcaaggcttattaccaatccatgaagagagcaaagacttgctttggttgtcaaag |
14524823 |
T |
|
| Q |
219 |
ctttctttccacttcaacagagactctgcctcacggcctttgatttttgttgcagcatgaggtgatgtgatcattacaaacacataaaagaacaaaa |
315 |
Q |
| |
|
||| ||||||| ||||| | || | |||||| | || || || |||| || |||| ||||||||||| ||||||||||| | |||||||||||| |
|
|
| T |
14524824 |
cttgctttccatttcaataaagcatttgcctcgctgctttgcatatttgctgaagcaagaggtgatgtggccattacaaacatacaaaagaacaaaa |
14524920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 141; Significance: 8e-74; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 21 - 333
Target Start/End: Complemental strand, 5462 - 5150
Alignment:
| Q |
21 |
ttgtttcttaaaactaaggtacggatttttggaagtgatgagaaattgagactttgaagtgtaccttttagtccaatattggtgagatttaccttgttga |
120 |
Q |
| |
|
|||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||| || |
|
|
| T |
5462 |
ttgttttttaaaactaagatgcggatttttggaagtgatgagaaattgagactttgaagcataccttttaggccaatattggtgagatttaacttgcaga |
5363 |
T |
|
| Q |
121 |
tggattttgaatcatcatcacatgtgattccttcccagctactacaaggattattaccaatccatgaagagagtaatgctttgctttggttgtcaaagct |
220 |
Q |
| |
|
| |||||||| |||||| |||||||||||||||||| ||||||||||||| ||||| |||||||||||||| ||||| | || |||||||||||||| |
|
|
| T |
5362 |
tagattttgagtcatcacaacatgtgattccttcccaactactacaaggatcgttaccgatccatgaagagagcaatgccctactatggttgtcaaagct |
5263 |
T |
|
| Q |
221 |
ttctttccacttcaacagagactctgcctcacggcctttgatttttgttgcagcatgaggtgatgtgatcattacaaacacataaaagaacaaaagaaga |
320 |
Q |
| |
|
| ||||||||||||| ||| ||| | || | ||||| ||||||||||| ||||||||||||||| |||||||||||||| ||||||| | ||| | |
|
|
| T |
5262 |
tgctttccacttcaatagaacatctacttcgctgccttggatttttgttgtggcatgaggtgatgtggctattacaaacacatagaagaacagacgaaca |
5163 |
T |
|
| Q |
321 |
cacgacattggta |
333 |
Q |
| |
|
||| ||| ||||| |
|
|
| T |
5162 |
cacaacaatggta |
5150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 10960 - 10660
Alignment:
| Q |
19 |
agttgtttcttaaaactaaggtacggatttttggaagtgatgagaaattgagactttgaagtgtaccttttagtccaatattggtgagatttaccttgtt |
118 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| | | |||| || ||||| |
|
|
| T |
10960 |
agttgtttcttaaaactaagctatggatttttggaagtgatgagatattgagattttgaagtgtaccttttagtccaatacttgcaagatgtatcttgta |
10861 |
T |
|
| Q |
119 |
gatggattttgaatcatcatcacatgtgattccttcccagctactacaaggattattaccaatccatgaagagagtaatgctttgctttggttgtcaaag |
218 |
Q |
| |
|
||| |||||||| | |||||||||||||||| |||| | | ||||| ||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
10860 |
gatagattttgacttgccatcacatgtgattcccaccca---attgcaaggcttattaccaatccatgaagagagcaatgacttgctttggttgtcaaag |
10764 |
T |
|
| Q |
219 |
ctttctttccacttcaacagagactctgcctcacggcctttgatttttgttgcagcatgaggtgatgtgatcattacaaacacataaaagaacaaaagaa |
318 |
Q |
| |
|
||| ||||||| ||||| | || | |||||| | || || |||||| | ||||||||||||||| ||||||||||| | |||||||| |||||| |
|
|
| T |
10763 |
cttgctttccatttcaataaagcatttgcctcgctgctttgcgtttttgacgaagcatgaggtgatgttgccattacaaacatacaaaagaaccaaagaa |
10664 |
T |
|
| Q |
319 |
gaca |
322 |
Q |
| |
|
|||| |
|
|
| T |
10663 |
gaca |
10660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 141; Significance: 8e-74; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 21 - 333
Target Start/End: Complemental strand, 6106 - 5794
Alignment:
| Q |
21 |
ttgtttcttaaaactaaggtacggatttttggaagtgatgagaaattgagactttgaagtgtaccttttagtccaatattggtgagatttaccttgttga |
120 |
Q |
| |
|
|||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||| || |
|
|
| T |
6106 |
ttgttttttaaaactaagatgcggatttttggaagtgatgagaaattgagactttgaagcataccttttaggccaatattggtgagatttaacttgcaga |
6007 |
T |
|
| Q |
121 |
tggattttgaatcatcatcacatgtgattccttcccagctactacaaggattattaccaatccatgaagagagtaatgctttgctttggttgtcaaagct |
220 |
Q |
| |
|
| |||||||| |||||| |||||||||||||||||| ||||||||||||| ||||| |||||||||||||| ||||| | || |||||||||||||| |
|
|
| T |
6006 |
tagattttgagtcatcacaacatgtgattccttcccaactactacaaggatcgttaccgatccatgaagagagcaatgccctactatggttgtcaaagct |
5907 |
T |
|
| Q |
221 |
ttctttccacttcaacagagactctgcctcacggcctttgatttttgttgcagcatgaggtgatgtgatcattacaaacacataaaagaacaaaagaaga |
320 |
Q |
| |
|
| ||||||||||||| ||| ||| | || | ||||| ||||||||||| ||||||||||||||| |||||||||||||| ||||||| | ||| | |
|
|
| T |
5906 |
tgctttccacttcaatagaacatctacttcgctgccttggatttttgttgtggcatgaggtgatgtggctattacaaacacatagaagaacagacgaaca |
5807 |
T |
|
| Q |
321 |
cacgacattggta |
333 |
Q |
| |
|
||| ||| ||||| |
|
|
| T |
5806 |
cacaacaatggta |
5794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 11603 - 11303
Alignment:
| Q |
19 |
agttgtttcttaaaactaaggtacggatttttggaagtgatgagaaattgagactttgaagtgtaccttttagtccaatattggtgagatttaccttgtt |
118 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| | | |||| || ||||| |
|
|
| T |
11603 |
agttgtttcttaaaactaagctatggatttttggaagtgatgagatattgagattttgaagtgtaccttttagtccaatacttgcaagatgtatcttgta |
11504 |
T |
|
| Q |
119 |
gatggattttgaatcatcatcacatgtgattccttcccagctactacaaggattattaccaatccatgaagagagtaatgctttgctttggttgtcaaag |
218 |
Q |
| |
|
||| |||||||| | |||||||||||||||| |||| | | ||||| ||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
11503 |
gatagattttgacttgccatcacatgtgattcccaccca---attgcaaggcttattaccaatccatgaagagagcaatgacttgctttggttgtcaaag |
11407 |
T |
|
| Q |
219 |
ctttctttccacttcaacagagactctgcctcacggcctttgatttttgttgcagcatgaggtgatgtgatcattacaaacacataaaagaacaaaagaa |
318 |
Q |
| |
|
||| ||||||| ||||| | || | |||||| | || || |||||| | ||||||||||||||| ||||||||||| | |||||||| |||||| |
|
|
| T |
11406 |
cttgctttccatttcaataaagcatttgcctcgctgctttgcgtttttgacgaagcatgaggtgatgttgccattacaaacatacaaaagaaccaaagaa |
11307 |
T |
|
| Q |
319 |
gaca |
322 |
Q |
| |
|
|||| |
|
|
| T |
11306 |
gaca |
11303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 16023154 - 16023082
Alignment:
| Q |
43 |
ggatttttggaagtgatgagaaattgagactttgaagtgtaccttttagtccaatattggtgagatttacctt |
115 |
Q |
| |
|
|||| ||||||||||||||||| || ||||||| ||| |||||||| | ||| ||||| |||||||||||||| |
|
|
| T |
16023154 |
ggatatttggaagtgatgagaagttaagactttcaagcgtacctttcaatcccatatttgtgagatttacctt |
16023082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 16101246 - 16101174
Alignment:
| Q |
43 |
ggatttttggaagtgatgagaaattgagactttgaagtgtaccttttagtccaatattggtgagatttacctt |
115 |
Q |
| |
|
|||| ||||||||||||||||| || ||||||| ||| |||||||| | ||| ||||| |||||||||||||| |
|
|
| T |
16101246 |
ggatatttggaagtgatgagaagttaagactttcaagcgtacctttcaatcccatatttgtgagatttacctt |
16101174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 16170924 - 16170852
Alignment:
| Q |
43 |
ggatttttggaagtgatgagaaattgagactttgaagtgtaccttttagtccaatattggtgagatttacctt |
115 |
Q |
| |
|
|||| ||||||||||||||||| || ||||||| ||| |||||||| | ||| ||||| |||||||||||||| |
|
|
| T |
16170924 |
ggatatttggaagtgatgagaagttaagactttcaagcgtacctttcaatcccatatttgtgagatttacctt |
16170852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 17847331 - 17847267
Alignment:
| Q |
48 |
tttggaagtgatgagaaattgagactttgaagtgtaccttttagtccaatattggtgagatttac |
112 |
Q |
| |
|
||||||| ||||||||| |||||| ||| |||||||||||||| ||| || || ||||||||||| |
|
|
| T |
17847331 |
tttggaaatgatgagaagttgagagtttcaagtgtaccttttaatcccatttttgtgagatttac |
17847267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 14603683 - 14603611
Alignment:
| Q |
43 |
ggatttttggaagtgatgagaaattgagactttgaagtgtaccttttagtccaatattggtgagatttacctt |
115 |
Q |
| |
|
|||| ||||||||||||||||| || ||||||| || |||||||| | ||| ||||| || ||||||||||| |
|
|
| T |
14603683 |
ggatatttggaagtgatgagaagttaagactttcgagcgtacctttcaatcccatatttgtcagatttacctt |
14603611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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