View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17507_low_7 (Length: 371)
Name: NF17507_low_7
Description: NF17507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17507_low_7 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0268 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 22 - 371
Target Start/End: Original strand, 19457016 - 19457365
Alignment:
| Q |
22 |
gaagaagtcgatctttcctccgatctcaagcactggcaaaacctcaccgacggggaacgccacttcatctctcatgtcctcgccttcttcgctgcctccg |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19457016 |
gaagaagtcgatctttcctccgatctcaagcactggcaaaacctcaccgacggcgaacgccacttcatctctcatgtcctcgccttcttcgctgcctccg |
19457115 |
T |
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| Q |
122 |
acggcatcgtccttgaaaatctcgccggtagatttatgaaagaaatccaagtctccgaagcacgtgccttctacggtttccagattgcaattgaaaacat |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19457116 |
acggcatcgtccttgaaaatctcgccggtagatttatgaaagaaatccaagtctctgaagcacgtgccttctacggtttccagattgcaattgaaaacat |
19457215 |
T |
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| Q |
222 |
ccactctgagatgtattctcttctcctcgaaacgtatataagtgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcg |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
19457216 |
ccactctgagatgtattctcttctcctcgaaacgtatataagcgattccgctgaaaagaatcgcttatttcatgcaattgaaacaattccatgtatcgcg |
19457315 |
T |
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| Q |
322 |
aaaaaggctgattgggctatgaaatggatcgattcaagcgattcttttgc |
371 |
Q |
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| T |
19457316 |
aagaaagctgattgggcgatgaaatggatcgattcaagcgattcttttgc |
19457365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0268 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 20 - 371
Target Start/End: Original strand, 22503 - 22854
Alignment:
| Q |
20 |
ccgaagaagtcgatctttcctccgatctcaagcactggcaaaacctcaccgacggggaacgccacttcatctctcatgtcctcgccttcttcgctgcctc |
119 |
Q |
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|||||||||| ||||||||||||||||||||||||||| | |||||||| ||||| |||||||||||||||||||| || || ||||||||||| ||||| |
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| T |
22503 |
ccgaagaagttgatctttcctccgatctcaagcactggaacaacctcacagacggcgaacgccacttcatctctcacgttcttgccttcttcgccgcctc |
22602 |
T |
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| Q |
120 |
cgacggcatcgtccttgaaaatctcgccggtagatttatgaaagaaatccaagtctccgaagcacgtgccttctacggtttccagattgcaattgaaaac |
219 |
Q |
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||||| || |||||||||||||| ||||| ||||| ||||||||| ||||| |||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
22603 |
agacggaattgtccttgaaaatcttgccggaagattcatgaaagaagtccaaatctccgaagcacgtgccttctatggtttccaaattgcaattgaaaac |
22702 |
T |
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| Q |
220 |
atccactctgagatgtattctcttctcctcgaaacgtatataagtgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcg |
319 |
Q |
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||||| ||||||||||| || |||||| | ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22703 |
atccattctgagatgtactcccttctcattgaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcg |
22802 |
T |
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| Q |
320 |
cgaaaaaggctgattgggctatgaaatggatcgattcaagcgattcttttgc |
371 |
Q |
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||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
22803 |
cgaaaaaggctgattgggcaatgaaatggattgattcaagcgattcttttgc |
22854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 20 - 371
Target Start/End: Complemental strand, 10197585 - 10197234
Alignment:
| Q |
20 |
ccgaagaagtcgatctttcctccgatctcaagcactggcaaaacctcaccgacggggaacgccacttcatctctcatgtcctcgccttcttcgctgcctc |
119 |
Q |
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|||||||||| ||||||||||||||||||||||||||| | |||||||| ||||| |||||||||||||||||||| || || ||||||||||| ||||| |
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| T |
10197585 |
ccgaagaagttgatctttcctccgatctcaagcactggaacaacctcacagacggcgaacgccacttcatctctcacgttcttgccttcttcgccgcctc |
10197486 |
T |
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| Q |
120 |
cgacggcatcgtccttgaaaatctcgccggtagatttatgaaagaaatccaagtctccgaagcacgtgccttctacggtttccagattgcaattgaaaac |
219 |
Q |
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||||| || |||||||||||||| ||||| ||||| ||||||||| ||||| |||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
10197485 |
agacggaattgtccttgaaaatcttgccggaagattcatgaaagaagtccaaatctccgaagcacgtgccttctatggtttccaaattgcaattgaaaac |
10197386 |
T |
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| Q |
220 |
atccactctgagatgtattctcttctcctcgaaacgtatataagtgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcg |
319 |
Q |
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||||| ||||||||||| || |||||| | ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10197385 |
atccattctgagatgtactcccttctcattgaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcg |
10197286 |
T |
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| Q |
320 |
cgaaaaaggctgattgggctatgaaatggatcgattcaagcgattcttttgc |
371 |
Q |
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| T |
10197285 |
cgaaaaaggctgattgggcaatgaaatggattgattcaagcgattcttttgc |
10197234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 371
Target Start/End: Complemental strand, 25026077 - 25025726
Alignment:
| Q |
20 |
ccgaagaagtcgatctttcctccgatctcaagcactggcaaaacctcaccgacggggaacgccacttcatctctcatgtcctcgccttcttcgctgcctc |
119 |
Q |
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|||||||||||||||||||||||||||| | |||||| | |||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
25026077 |
ccgaagaagtcgatctttcctccgatcttcaacactggaacaacctcaccgacggcgaacgccacttcatctctcacatcctcgccttcttcgccgcctc |
25025978 |
T |
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| Q |
120 |
cgacggcatcgtccttgaaaatctcgccggtagatttatgaaagaaatccaagtctccgaagcacgtgccttctacggtttccagattgcaattgaaaac |
219 |
Q |
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|||||| |||||||| |||||||||||||| ||||| ||||||||| | ||| |||| ||||| ||||| |||||||| || || || || ||||||||| |
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| T |
25025977 |
cgacggtatcgtcctcgaaaatctcgccggaagattcatgaaagaagttcaaatctctgaagcgcgtgctttctacgggtttcaaatcgctattgaaaac |
25025878 |
T |
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| Q |
220 |
atccactctgagatgtattctcttctcctcgaaacgtatataagtgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcg |
319 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| |||||||| ||||| | |
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| T |
25025877 |
atccactcagagatgtattctcttctcctcgaaacgtatataagcgattctgctgaaaagaatcgattatttcacgcaattgacacaattccgtgtattg |
25025778 |
T |
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| Q |
320 |
cgaaaaaggctgattgggctatgaaatggatcgattcaagcgattcttttgc |
371 |
Q |
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| || || |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25025777 |
ctaagaaagctgattgggctttgaaatggatcgattcaagcgattcttttgc |
25025726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 5971477 - 5971517
Alignment:
| Q |
232 |
atgtattctcttctcctcgaaacgtatataagtgattctgc |
272 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |
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| T |
5971477 |
atgtattctcttctcctcgaaatgtatataagtgattctgc |
5971517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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