View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17507_low_8 (Length: 341)
Name: NF17507_low_8
Description: NF17507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17507_low_8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 341
Target Start/End: Original strand, 5417352 - 5417678
Alignment:
| Q |
9 |
cgaagaatataaattcatgttttcttttnnnnnnnntctctaattgaagtaagactgatactacaattgaatattgtcgaatatgactcatagaagtaat |
108 |
Q |
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| T |
5417352 |
cgaataatataaattcatgttttctttaaaaaaaattctttaattaaagtaagactgatactacacttgaatattgtcgaatatgactcatagaagtaat |
5417451 |
T |
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| Q |
109 |
gctgcaatccaaacgacatgtattttaatacaagttgtacactattgtaaacctatgacattgaaataattgaatatttatattaatttgtaatgcacgg |
208 |
Q |
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| T |
5417452 |
gctgcaatccaaacgacatgtattttaatacaagttgtacactatcgtaaacctatgccattgaaataattgaa----tatattaatttgtaatgcacgg |
5417547 |
T |
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| Q |
209 |
tcgatacacattatatataaaattcaattgtaaaattcttcccattttattaaacgtgtacttacaattgaatgtgtttttctagagggtacattgagag |
308 |
Q |
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| T |
5417548 |
tcgatacacattatatataaaattcaattgt-aaattctttctattttattacatgtgtatttacaattgaatgtgtttttctagagggtacattgagag |
5417646 |
T |
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| Q |
309 |
tctagcatgggctagacacaacaatgggcttgc |
341 |
Q |
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| T |
5417647 |
tct-gcatgggctacacacaacaatgggtttgc |
5417678 |
T |
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