View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17507_low_9 (Length: 337)
Name: NF17507_low_9
Description: NF17507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17507_low_9 |
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| [»] scaffold0268 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 19457259 - 19457588
Alignment:
| Q |
1 |
gattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctgattgggctatgaaatggatcgattcaagcgatt |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||| |
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| T |
19457259 |
gattccgctgaaaagaatcgcttatttcatgcaattgaaacaattccatgtatcgcgaagaaagctgattgggcgatgaaatggatcgattcaagcgatt |
19457358 |
T |
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| Q |
101 |
cttttgcagaaagaatcgttgcatttgcttgtgttgaaggaatctttttctccggaagcttctgtgcgattttttggttgaaaaagcgtggtttaatgcc |
200 |
Q |
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| T |
19457359 |
cttttgcagaaagaatcgttgcgtttgcttgtgttgaaggaatctttttctccggaagcttctgtgcgattttctggttgaaaaagcgcggtttaatgcc |
19457458 |
T |
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| Q |
201 |
gggattaaccttctcaaacgagcttatttcacgcgatgaaggattacactgtgatttcgcttgtttgttatactcacttctacgaaagaagctaagttca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19457459 |
gggattaaccttctcaaacgagcttatttcacgcgacgaaggattgcactgtgatttcgcttgtttgttatactcacttctacgaaagaagctaagttca |
19457558 |
T |
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| Q |
301 |
gagcgcgtgaaagaaattgtctgtgctgct |
330 |
Q |
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| T |
19457559 |
gagcgcgtgaaagaaattgtttgtgatgct |
19457588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0268 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 22748 - 23067
Alignment:
| Q |
1 |
gattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctgattgggctatgaaatggatcgattcaagcgatt |
100 |
Q |
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| T |
22748 |
gattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctgattgggcaatgaaatggattgattcaagcgatt |
22847 |
T |
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| Q |
101 |
cttttgcagaaagaatcgttgcatttgcttgtgttgaaggaatctttttctccggaagcttctgtgcgattttttggttgaaaaagcgtggtttaatgcc |
200 |
Q |
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| T |
22848 |
cttttgctgaaagaatcgttgcatttgcttgtgtagaaggaattttcttctccggaagcttttgcgcgattttctggttgaaaaagcgcggtttaatgcc |
22947 |
T |
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| Q |
201 |
gggattaaccttctcaaacgagcttatttcacgcgatgaaggattacactgtgatttcgcttgtttgttatactcacttctacgaaagaagctaagttca |
300 |
Q |
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| T |
22948 |
agggttaacattctcaaacgagcttatttcacgtgacgaaggtctgcactgtgattttgcttgtttgttatactcacttctacaaaagaaactaacttca |
23047 |
T |
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| Q |
301 |
gagcgcgtgaaagaaattgt |
320 |
Q |
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| T |
23048 |
gagcgtgtgaaggaaattgt |
23067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 10197340 - 10197021
Alignment:
| Q |
1 |
gattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctgattgggctatgaaatggatcgattcaagcgatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
10197340 |
gattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctgattgggcaatgaaatggattgattcaagcgatt |
10197241 |
T |
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| Q |
101 |
cttttgcagaaagaatcgttgcatttgcttgtgttgaaggaatctttttctccggaagcttctgtgcgattttttggttgaaaaagcgtggtttaatgcc |
200 |
Q |
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| T |
10197240 |
cttttgctgaaagaatcgttgcatttgcttgtgtagaaggaattttcttctccggaagcttttgcgcgattttctggttgaaaaagcgcggtttaatgcc |
10197141 |
T |
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| Q |
201 |
gggattaaccttctcaaacgagcttatttcacgcgatgaaggattacactgtgatttcgcttgtttgttatactcacttctacgaaagaagctaagttca |
300 |
Q |
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|| ||||| ||||||||||||||||||||||| || ||||| | ||||||||||| ||||||||||||||||||||||||| |||||| |||| |||| |
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| T |
10197140 |
agggttaacattctcaaacgagcttatttcacgtgacgaaggtctgcactgtgattttgcttgtttgttatactcacttctactaaagaaactaacttca |
10197041 |
T |
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| Q |
301 |
gagcgcgtgaaagaaattgt |
320 |
Q |
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| T |
10197040 |
gagcgtgtgaaggaaattgt |
10197021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 25025832 - 25025558
Alignment:
| Q |
1 |
gattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctgattgggctatgaaatggatcgattcaagcgatt |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| |||||||| ||||| || || || |||||||||||| |||||||||||||||||||||||| |
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| T |
25025832 |
gattctgctgaaaagaatcgattatttcacgcaattgacacaattccgtgtattgctaagaaagctgattgggctttgaaatggatcgattcaagcgatt |
25025733 |
T |
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| Q |
101 |
cttttgcagaaagaatcgttgcatttgcttgtgttgaaggaatctttttctccggaagcttctgtgcgattttttggttgaaaaagcgtggtttaatgcc |
200 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| || ||||||||||| |
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| T |
25025732 |
cttttgcagaaagaatcgttgctttcgcttgtgttgaaggaattttcttctccggaagcttctgtgcgattttctggttgaaaaaacgcggtttaatgcc |
25025633 |
T |
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| Q |
201 |
gggattaaccttctcaaacgagcttatttcacgcgatgaaggattacactgtgatttcgcttgtttgttatactc |
275 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |
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| T |
25025632 |
gggattaactttctcaaacgagcttatttcacgcgacgaaggcttacactgtgattttgcttgtttgttatactc |
25025558 |
T |
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