View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17508_high_1 (Length: 510)
Name: NF17508_high_1
Description: NF17508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17508_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 18 - 500
Target Start/End: Complemental strand, 6515691 - 6515209
Alignment:
| Q |
18 |
cagttttgctaagacagcttctctgcatgccataccatactgctcagttgttttcttcaattctagttttaatttctttatttttgcctcaatccttatc |
117 |
Q |
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| T |
6515691 |
cagttttgctaagacagcttctctgcatgccataccatactgctcagttgttttcttcaattctagttttaatttctttatttttgcctcaatccttatc |
6515592 |
T |
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| Q |
118 |
tgcaactatatgatgattcatgcaaaaggagaaaataaagttaataaacatatatgatctaagtagtttgatatcaaatcaatgattggaagtgattatt |
217 |
Q |
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| T |
6515591 |
tgcaactatatgatgattcatgcaaaaggagaaaataaagttaataaacatatatgatctaagtagtttgatatcaaatcaatgattggaagtgattatt |
6515492 |
T |
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| Q |
218 |
gcatgaaagtacaaaaaattgtgacacataccaatataacatattacactcaagaacctcattattttgatacatgcataacttgataaactataattcg |
317 |
Q |
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| T |
6515491 |
gcatgaaagtacaaaaaattgtgacacataccaatataacatattacactcaagaacctcattattttgatacatgcataacttgataaactagaattcg |
6515392 |
T |
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| Q |
318 |
tcaatgcaagtgtaaaagaaaagggcatgtgtacttactggtggttttgaagaaagtaagcacttagtattgtctgaatttataacttcatgatttccat |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6515391 |
tcaatgcaagtgtaaaagaaaagggcatgtgtacttactggtggttttgaagaaagtaagcgcttagtattgtctgaatttataacttcatgatttccat |
6515292 |
T |
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| Q |
418 |
gtttccctgaactatcattactattggcaggagaacttctattcgatgaagtttgcgacgaggagcttccggctgatattctt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6515291 |
gtttccctgaactatcattactattggcaggagaacttctattcgatgaagtttgcgacgaggagcttccggctgataatctt |
6515209 |
T |
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