View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17508_high_12 (Length: 208)
Name: NF17508_high_12
Description: NF17508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17508_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 1e-67; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 22837742 - 22837919
Alignment:
| Q |
18 |
attcagacaactctgcataacatttcggcatcctttccacaagttattatgatctgaataacatgtctttaatgggctagtcggttggtactgttataga |
117 |
Q |
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| T |
22837742 |
attcagacaactccacataacatttcgccatcctttctgcaagttattatgatccggataacatgtctttaatgggctagtcggttggtactgttataga |
22837841 |
T |
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| Q |
118 |
atgggccagcaagttttcacagaattttcaaccacattcattaaggttagagcaatcttttcaatcttatgatatatt |
195 |
Q |
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| T |
22837842 |
atgggccagcaagttttcacggaatttccagccacattcattaaggttagagcaatcttttcgatcttctgatatatt |
22837919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 36 - 192
Target Start/End: Original strand, 22827307 - 22827463
Alignment:
| Q |
36 |
aacatttcggcatcctttccacaagttattatgatctgaataacatgtctttaatgggctagtcggttggtactgttatagaatgggccagcaagttttc |
135 |
Q |
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| T |
22827307 |
aacatttcgccatgctttccgcaagttaatatgatctgaataacatgtgtttattgggctggtcgatttgtactattatagaatgggccaagaagtattc |
22827406 |
T |
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| Q |
136 |
acagaattttcaaccacattcattaaggttagagcaatcttttcaatcttatgatat |
192 |
Q |
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| T |
22827407 |
acggactttccagccacgttcattaaggttagagcaatcttttcgatcttctgatat |
22827463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 33 - 192
Target Start/End: Original strand, 22815003 - 22815159
Alignment:
| Q |
33 |
cataacatttcggcatcctttccacaagttattatgatctgaataacatgtctttaatgggctagtcggttggtactgttatagaatgggccagcaagtt |
132 |
Q |
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| T |
22815003 |
cataacatttcgtcatcctttcatcaagttat---gatctaaataacatgtgtttaatggtctggtcggtttgtactattatagaatgggtcaggaagtt |
22815099 |
T |
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| Q |
133 |
ttcacagaattttcaaccacattcattaaggttagagcaatcttttcaatcttatgatat |
192 |
Q |
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| T |
22815100 |
ttcacgaacattccagccacgctcattaacgttagagcaatcttttcgatcttctgatat |
22815159 |
T |
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