View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17508_high_3 (Length: 372)

Name: NF17508_high_3
Description: NF17508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17508_high_3
NF17508_high_3
[»] chr3 (2 HSPs)
chr3 (1-290)||(49770396-49770685)
chr3 (273-325)||(8537245-8537297)
[»] chr7 (7 HSPs)
chr7 (260-325)||(4302309-4302374)
chr7 (327-365)||(4302292-4302330)
chr7 (179-230)||(39346414-39346465)
chr7 (179-230)||(39360965-39361016)
chr7 (179-230)||(39550606-39550657)
chr7 (179-228)||(39541348-39541397)
chr7 (179-228)||(39567399-39567448)
[»] chr1 (3 HSPs)
chr1 (254-325)||(2163759-2163830)
chr1 (260-325)||(2151491-2151556)
chr1 (327-365)||(2163809-2163847)
[»] chr6 (3 HSPs)
chr6 (236-290)||(3826037-3826091)
chr6 (13-78)||(3825955-3826021)
chr6 (185-258)||(3828200-3828273)
[»] chr4 (1 HSPs)
chr4 (178-231)||(2900484-2900537)
[»] chr2 (1 HSPs)
chr2 (52-93)||(43460065-43460106)


Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 49770685 - 49770396
Alignment:
Q  1 aattcttcagcgaattctctaacagtgataaaggtatatggcttatctttatttgaccagtactgttcttgatcttttcttgaagttacctgtcatataa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49770685 aattcttcagcgaattctctaacagtgataaaggtatatggcttatctttatttgaccagtactgttcttgatcttttcttgaagttacctgtcatataa 49770586  T
Q  101 agagatgagtatagtgtcttctattaaaggtgaaaagtgcaaaacaagtcatagagtctaatgaagctaagaaaaagtacttcttgtaaaaaatctgcta 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49770585 agagataagtatagtgtcttctattaaaggtgaaaagtgcaaaacaagtcatagagtctaatgaagctaagaaaaagtacttcttgtaaaaaatctgcta 49770486  T
Q  201 ctcctttcctctctggacatttgaaaccaacatgctcaaagaattcgaggacgttttcccttggaccttgatacacaatttgtccatctg 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  49770485 ctcctttcctctctggacatttgaaaccaacatgctcaaagaattcgaggacgttttcccttggaccttgatacacaatttgtccgtctg 49770396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 8537245 - 8537297
Alignment:
Q  273 acacaatttgtccatctgtaagcaatatgatatcatcgaataattcataagtt 325  Q
    ||||||||||||||||||| ||||||||||||||||  |||||||||||||||    
T  8537245 acacaatttgtccatctgtgagcaatatgatatcattaaataattcataagtt 8537297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 260 - 325
Target Start/End: Complemental strand, 4302374 - 4302309
Alignment:
Q  260 cttggaccttgatacacaatttgtccatctgtaagcaatatgatatcatcgaataattcataagtt 325  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4302374 cttgggccttgatacacaatttgtccatctgtaagcaatatgatatcatcgaataattcataagtt 4302309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 365
Target Start/End: Original strand, 4302292 - 4302330
Alignment:
Q  327 ctacagccagcactagaaacttatgaattatttgatgat 365  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  4302292 ctacagccagcactagaaacttatgaattattcgatgat 4302330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 39346465 - 39346414
Alignment:
Q  179 acttcttgtaaaaaatctgctactcctttcctctctggacatttgaaaccaa 230  Q
    |||||||| ||||||||||| ||||||||||| | ||||||||| |||||||    
T  39346465 acttcttgcaaaaaatctgccactcctttcctatttggacatttaaaaccaa 39346414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 39361016 - 39360965
Alignment:
Q  179 acttcttgtaaaaaatctgctactcctttcctctctggacatttgaaaccaa 230  Q
    |||||||| ||||||||||| ||||||||||| | ||||||||| |||||||    
T  39361016 acttcttgcaaaaaatctgccactcctttcctatttggacatttaaaaccaa 39360965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 39550606 - 39550657
Alignment:
Q  179 acttcttgtaaaaaatctgctactcctttcctctctggacatttgaaaccaa 230  Q
    |||||||| ||||||||||| ||||||||||| || |||||||| |||||||    
T  39550606 acttcttgcaaaaaatctgccactcctttcctatcaggacatttaaaaccaa 39550657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 39541348 - 39541397
Alignment:
Q  179 acttcttgtaaaaaatctgctactcctttcctctctggacatttgaaacc 228  Q
    |||||||| ||||||||||| ||||||||||| || |||||||| |||||    
T  39541348 acttcttgcaaaaaatctgccactcctttcctatcaggacatttaaaacc 39541397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 39567399 - 39567448
Alignment:
Q  179 acttcttgtaaaaaatctgctactcctttcctctctggacatttgaaacc 228  Q
    |||||||| || |||||||| ||||||||||| ||||||||||| |||||    
T  39567399 acttcttgcaagaaatctgccactcctttcctatctggacatttaaaacc 39567448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 254 - 325
Target Start/End: Original strand, 2163759 - 2163830
Alignment:
Q  254 ttttcccttggaccttgatacacaatttgtccatctgtaagcaatatgatatcatcgaataattcataagtt 325  Q
    ||||| ||||| |||||||||||||||||||||||||| |||| ||| |||||||| |||||||||||||||    
T  2163759 ttttctcttggtccttgatacacaatttgtccatctgtgagcagtattatatcatcaaataattcataagtt 2163830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 325
Target Start/End: Original strand, 2151491 - 2151556
Alignment:
Q  260 cttggaccttgatacacaatttgtccatctgtaagcaatatgatatcatcgaataattcataagtt 325  Q
    ||||| ||||||||||||||||||||||| || || | ||| |||||||| |||| ||||||||||    
T  2151491 cttggtccttgatacacaatttgtccatcagtgagaagtattatatcatcaaatagttcataagtt 2151556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 365
Target Start/End: Complemental strand, 2163847 - 2163809
Alignment:
Q  327 ctacagccagcactagaaacttatgaattatttgatgat 365  Q
    ||||| ||||||| |||||||||||||||||||||||||    
T  2163847 ctacaaccagcaccagaaacttatgaattatttgatgat 2163809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 3826037 - 3826091
Alignment:
Q  236 tcaaagaattcgaggacgttttcccttggaccttgatacacaatttgtccatctg 290  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  3826037 tcaaagaattcgaggacgttttcacttggaccttgatacacaatttgtccgtctg 3826091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 3825955 - 3826021
Alignment:
Q  13 aattctctaacagtgataaaggtatatggcttatctttatttgaccagtactgttct-tgatctttt 78  Q
    |||||||| ||||||||||||| |||||||  ||||||||||||||| ||||||||| |||||||||    
T  3825955 aattctctgacagtgataaagggatatggcccatctttatttgaccaatactgttctctgatctttt 3826021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 258
Target Start/End: Original strand, 3828200 - 3828273
Alignment:
Q  185 tgtaaaaaatctgctactcctttcctctctggacatttgaaaccaacatgctcaaagaattcgaggacgttttc 258  Q
    |||||||| | ||||||||||||||||| |||| |||||||||| |  || |||||||||| ||||||||||||    
T  3828200 tgtaaaaagtttgctactcctttcctctttggaaatttgaaacctatgtgttcaaagaatttgaggacgttttc 3828273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 2900484 - 2900537
Alignment:
Q  178 tacttcttgtaaaaaatctgctactcctttcctctctggacatttgaaaccaac 231  Q
    ||||||||| | ||| || ||||| ||||||||||| |||||||||||||||||    
T  2900484 tacttcttgaagaaagtcagctacccctttcctctcaggacatttgaaaccaac 2900537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 43460065 - 43460106
Alignment:
Q  52 tttgaccagtactgttcttgatcttttcttgaagttacctgt 93  Q
    ||||||||||| |||||||||||||| |||||||| ||||||    
T  43460065 tttgaccagtattgttcttgatctttccttgaagtaacctgt 43460106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University