View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17508_high_4 (Length: 352)
Name: NF17508_high_4
Description: NF17508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17508_high_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 53176887 - 53177239
Alignment:
| Q |
1 |
ataattcattttgttcaaaaaacaacttatttaatcaaaattttgttggtgtaccataaaattt-gccaatataagatacattttaatgaatccacacac |
99 |
Q |
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| T |
53176887 |
ataattcattttgtttaaaaaacaactcatttaatcaaaattttattggtgtaacatagaattttgccaatataaaatacattttaatgaatccacacac |
53176986 |
T |
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| Q |
100 |
atcaccatttaccgaagcaagttaattaacaatgctaccattcagaaaaacccatagattataggtgttggaaacttgacgactaacattagctagttta |
199 |
Q |
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| T |
53176987 |
atcaccatttactgaagcaagttaattaacaatgctacaattcagaaaaacccatagattataggtgttggaaacttgacgactaacattagctagttta |
53177086 |
T |
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| Q |
200 |
cattgtttagagaaatttccagtattttctgagagacgataataagactttcactgtaaatttaagatgaattacgagataaattgattagaacgttact |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53177087 |
cattgtttagagaaatttccagtattttctgagagacgataataagactttcactgtaaatttaagatgaattacgagataaattgattagaacgttact |
53177186 |
T |
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| Q |
300 |
tttcatatggccggtaaaattgctaaactatttacactggaactagccctgaa |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53177187 |
tttcatatggccggtaaaattgctaaactatttacactggaactagccctgaa |
53177239 |
T |
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