View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17508_low_11 (Length: 221)
Name: NF17508_low_11
Description: NF17508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17508_low_11 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 22838098 - 22837896
Alignment:
| Q |
13 |
aatatgttaccatccgaatcttgtttttgtcaattgtcattctctaatgtgcctt-atttattgtatcttagtctaattaactactttactaataactat |
111 |
Q |
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| T |
22838098 |
aatatgttaccatccgaatcttgtttttgtca-------ttgtctaatgtgccttgatttattgtatctcagtccaattaactactttactaataactat |
22838006 |
T |
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| Q |
112 |
attaataagggtactttgagaaattagtgaagcttttgtttatctcatgatgtactttgtaagcaaagtactcaagggtccgaaacaatatatcataaga |
211 |
Q |
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| T |
22838005 |
attaataagggtactttgagaaattagtgaagcttttgtttatctcatgatgtactttgtaagcaaagtactcaagggtccgaaacaatatatcagaaga |
22837906 |
T |
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| Q |
212 |
ttgaaaagat |
221 |
Q |
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| T |
22837905 |
tcgaaaagat |
22837896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 22827647 - 22827443
Alignment:
| Q |
13 |
aatatgttaccatccgaatcttgtttttgtcaattgtcattctctaatgtgccttatttattgtatcttagtctaattaactact---ttactaataact |
109 |
Q |
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| T |
22827647 |
aatatgttatcatccgaatcttgtttttgtca-------ttgtctaatgtgccttatttattgtatctcagtccaattaaatagtattttactgacaatt |
22827555 |
T |
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| Q |
110 |
atattaataagggtactttgagaaattagtgaagcttttgtttatctcatgatgtactttgtaagcaaagtactcaagggtccgaaacaatatatcataa |
209 |
Q |
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| T |
22827554 |
atattaataagggttctttgagaaattagtgaaacgtttgtttatctcatgatgtactttgtaagcaaagtactcaagggtccgaaacaagatatcagaa |
22827455 |
T |
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| Q |
210 |
gattgaaaagat |
221 |
Q |
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| T |
22827454 |
gatcgaaaagat |
22827443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 47 - 221
Target Start/End: Complemental strand, 22815314 - 22815139
Alignment:
| Q |
47 |
tgtcattctctaatgtgccttatttattgtatcttagtctaattaactactttactaa-taactatattaataagggtactttgagaaattagtgaagct |
145 |
Q |
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| T |
22815314 |
tgtcattgtctaatgtaccttgattattgtatctcaattcaattaactactttactaactaattatattaataagggtactttgagaaattagtgaagct |
22815215 |
T |
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| Q |
146 |
tttgtttatctcatgatgtactttgtaagcaaagtactcaagggtccgaaacaatatatcataagattgaaaagat |
221 |
Q |
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| T |
22815214 |
tttgtgtttcccatgatgtactttgtaaccaaagtactcaagggcccggaacaaaatatcagaagatcgaaaagat |
22815139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 189
Target Start/End: Complemental strand, 22851636 - 22851507
Alignment:
| Q |
55 |
tctaatgtgccttatttattgtatcttagtctaattaactactttactaataactatattaataagggtactttgagaaattagtgaagcttttgtttat |
154 |
Q |
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| T |
22851636 |
tctaatataccttatttagtgtatctggatccaattaactactttactaagtattatattaataa-ggtacttcgttaaattagtgaa-tttttgt---t |
22851542 |
T |
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| Q |
155 |
ctcatgatgtactttgtaagcaaagtactcaaggg |
189 |
Q |
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| T |
22851541 |
ctcacgatgcactttatgagtaaagtactcaaggg |
22851507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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