View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17508_low_5 (Length: 342)
Name: NF17508_low_5
Description: NF17508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17508_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 10 - 328
Target Start/End: Complemental strand, 39384790 - 39384472
Alignment:
| Q |
10 |
gcaaaggtagttcatatattcaaagtgcactgtgtgggagcttgtttgttaacattgaagtcacaatccaaaccgttggtttggtgcacattagatcagc |
109 |
Q |
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| T |
39384790 |
gcaaaggtagttcatatattcaaagtgcattgtatgggagcttgtttgttaacattgaagtcacaatccaaaccgttggtttggtgcacattagatcatc |
39384691 |
T |
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| Q |
110 |
tatctaacgttcatagtgtgaactttcttggtcatcttctctgaacagccatggcccgcaaccttctcctttctaggagctcttaccatctttattatat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39384690 |
tatctaacgttcatagtgtgaactttcttggtcatcttctctgaacagccatggcccgcaaccttctcctttctaggagctcttaccatctttattatat |
39384591 |
T |
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| Q |
210 |
gggaagagaatatatgtaccaaaaaataacaatatacaactgctttaagatcctttttattaccttttattcattcttagcaaggttgttcttaatgaaa |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39384590 |
gggaagagaatatatgtaccaaaaaataacaatatacaactgctttaagatcctttttattaccttttattcattcttagcaaggttgtgcttaatgaaa |
39384491 |
T |
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| Q |
310 |
aagaattaaagcagctttt |
328 |
Q |
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||||||||||||||||||| |
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| T |
39384490 |
aagaattaaagcagctttt |
39384472 |
T |
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