View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17508_low_6 (Length: 306)
Name: NF17508_low_6
Description: NF17508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17508_low_6 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 6 - 306
Target Start/End: Complemental strand, 34867962 - 34867662
Alignment:
| Q |
6 |
cacagaaacggacactagacatgatatagacacggacacgtcgacacgaagaatggtttgggaaaatgaaatcattcaatataatcacatgtgtcagtgt |
105 |
Q |
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| T |
34867962 |
cacagaaacggacactagacatgatatagacacggacacgtcgacaccaagaatggtttgggaaaatgaaatcattcaatataatcacatgtgtcagtgt |
34867863 |
T |
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| Q |
106 |
tggacacaaatacgtgtcggtgctacatagcatttatgtgtagagagtggtgttatggtttgtcaaggttaataagacaagaatcaggtttggatttggc |
205 |
Q |
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| T |
34867862 |
tggacacaaatacgtgtcggtgctacatagcatttatgtgtagagagtggtgttatggtttgtcaaggttgataagacaagaatcaagtttggatttggc |
34867763 |
T |
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| Q |
206 |
aaatttgaaaccaaatctgagtcctgtatctaaaatgattttggggaattctgtgtaaaactgaatcgaggatagaatcagtaaaatcaccctgttaatc |
305 |
Q |
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| T |
34867762 |
aaatttgaaaccaaatctaagtcctgtatctaaaatgattttggggaattctgcgtaaaactgaatcgaggatagaatcagtaaaatcaccctgttaatc |
34867663 |
T |
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| Q |
306 |
t |
306 |
Q |
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| T |
34867662 |
t |
34867662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 9024248 - 9024178
Alignment:
| Q |
35 |
acacggacacgtcgacacgaagaatggtttgggaaaatgaaatcattcaatataatcacatgtgtcagtgt |
105 |
Q |
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| T |
9024248 |
acacggacacgtcgacacaaatgataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgt |
9024178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 42874536 - 42874588
Alignment:
| Q |
62 |
tttgggaaaatgaaatcattcaatataatcacatgtgtcagtgttggacacaa |
114 |
Q |
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| T |
42874536 |
tttgagaaaatgacataattcaatgtaatcacaagtgtcagtgttggacacaa |
42874588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 23287415 - 23287351
Alignment:
| Q |
41 |
acacgtcgacacgaagaatggtttgggaaaatgaaatcattcaatataatcacatgtgtcagtgt |
105 |
Q |
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| T |
23287415 |
acacgtcgacaccaataataatttaggaaaatgacataattcaatataattatatgtgtcagtgt |
23287351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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