View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17508_low_7 (Length: 283)
Name: NF17508_low_7
Description: NF17508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17508_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 17 - 226
Target Start/End: Original strand, 24638549 - 24638758
Alignment:
| Q |
17 |
atcataagacgtgcaccattcttacccactctcctttctcttcgattgcttaatctataaaaattctatcaatttgtagcattcaccatacaataaatca |
116 |
Q |
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| T |
24638549 |
atcataagactcgcaccattcttacccactctcctttctcttcgattgcttaatctataaaaaaattatcaatttgtagcattcaccatacaataaatca |
24638648 |
T |
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| Q |
117 |
tcaaatgtaatcaacaatctgcaaagataggtaaatacaccatgtcacataatcaaatcacaaaaagggtatgtatttatgttccaattcacaataacaa |
216 |
Q |
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| T |
24638649 |
tcaaatgtaatcaacaatctgcaaagataggtaaatacaccatgtcacataatcaaatcacaaaaagggcatgtatttatgtttcaattcacaataacaa |
24638748 |
T |
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| Q |
217 |
caatcataaa |
226 |
Q |
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| T |
24638749 |
cagtcataaa |
24638758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 24645240 - 24645330
Alignment:
| Q |
30 |
caccattcttacccactctcctttctcttcgattgcttaatctataaaaattctatcaatttgtagcattcaccatacaataaatcatcaa |
120 |
Q |
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|||||||||| ||| ||||||||||||||| |||||| |||| |||||||||||||||| |||| ||||| | ||||| |||||||||| |
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| T |
24645240 |
caccattcttgcccgctctcctttctcttcacttgcttcatctttaaaaattctatcaatctgtaacattcgcattacaagaaatcatcaa |
24645330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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