View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17509_high_1 (Length: 549)
Name: NF17509_high_1
Description: NF17509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17509_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 88 - 539
Target Start/End: Original strand, 28747293 - 28747751
Alignment:
| Q |
88 |
ctgcagaaaactattggttggttaatggttaaagctctatttaactactatttggaacaaaattatgaaataacttgctcaataattgaaatttaatttg |
187 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
28747293 |
ctgcagaaaactattggttggttaatggctaaagctctatttaactactatttggaacaaaattatgaaataacttgctcaatagtagaaatttaatttg |
28747392 |
T |
|
| Q |
188 |
ttagtaacnnnnnnnn-----gtcaatgtggaacatcgtgagaaattgagttggtccaaaatatatgtaccaatattttttaagggaattgctggatatc |
282 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28747393 |
ttagtaactttttttttttttgtcaatgtggaacatcgtgagaaattgagttggtccaaaatatatgtaccaatattttttaagggaattgctggatatg |
28747492 |
T |
|
| Q |
283 |
gcgcgagattatgatgcgaaaatttcaccaccgtatataggccaattatcattcttaaatgatacacacaacgcgactttccttattttccggtctggat |
382 |
Q |
| |
|
| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
28747493 |
gtgagagattatgatgcaaaaatttcaccaccgtatataggccaattatcattcttaaatgatacacacaacgcgactttccttattttccgatttggat |
28747592 |
T |
|
| Q |
383 |
gaaattgagttggtaataaacctttacggtagcagtttgggataaagtgtatcgggacaaatagcaatgctcattttactctattcatttgactatgaat |
482 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28747593 |
gaaattgagttggttataaacctttacatgagcagtttgggataaagtgtatcggcacaaatagcaatgttcattttactctattcatttgactatgaat |
28747692 |
T |
|
| Q |
483 |
tattgaattgatgagatcaatgtttatatgactacaaa--tttgaatctgttacctatg |
539 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
28747693 |
tattgaattgatgggattaatgtttatatgactacaaatttttgaatgtgttacctatg |
28747751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 28765179 - 28765340
Alignment:
| Q |
32 |
agaagtttttctgtttcgaatttatctgcttcttcagaactctttctcacatcaaactgcagaaaactattggttggttaatggttaaagctctatttaa |
131 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||| ||| |
|
|
| T |
28765179 |
agaagtttctctgtttcgaatttctctgcttcttcagaactctttctcacatcaaactgcagaaaactattagttggttaatggctaaag--ctatataa |
28765276 |
T |
|
| Q |
132 |
ctactatttggaacaaaattatgaaataacttgctcaataattgaaatttaatttgttagtaac |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
28765277 |
ctactatttggaacaaaattatgaaataacttgctcaatagttgaaatttaatttgatagtaac |
28765340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 23 - 180
Target Start/End: Original strand, 28772675 - 28772831
Alignment:
| Q |
23 |
aacccactaagaagtttttctgtttcgaatttatctgcttcttcagaactctttctcacatcaaactgcagaaaactattggttggtt-aatggttaaag |
121 |
Q |
| |
|
|||||||| ||||||| ||| |||| ||||| || | |||||||| | ||||| | ||||||||||||||||||||| | ||| ||| |||| ||||| |
|
|
| T |
28772675 |
aacccactgcgaagtttctctttttctaatttctcggtttcttcagcattcttttttacatcaaactgcagaaaactagtagttagttaaatgaataaag |
28772774 |
T |
|
| Q |
122 |
ctctatttaactactatttggaacaaaattatgaaataacttgctcaataattgaaatt |
180 |
Q |
| |
|
||||| ||| ||||||||| ||||||| || ||||||||||| ||||| |||||||| |
|
|
| T |
28772775 |
ctcta--taagtactatttgaaacaaaactaagaaataacttgtccaatagttgaaatt |
28772831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 28747260 - 28747296
Alignment:
| Q |
24 |
acccactaagaagtttttctgtttcgaatttatctgc |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28747260 |
acccactaagaagtttttctgtttcgaatttatctgc |
28747296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University