View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17509_low_11 (Length: 207)
Name: NF17509_low_11
Description: NF17509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17509_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 2e-66; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 33416603 - 33416476
Alignment:
| Q |
15 |
taggtatgtaaaaggaaaaaataaatgtccatttggtttcaagtttatttagttcatagtcaattgcttaactaattagtgtatctcatagttataatta |
114 |
Q |
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| T |
33416603 |
taggtatgtaaaaggaaaaaataaatgtccatttggtttcaagtttatttagttcatagtcaattgcttaactaattagtgtatctcatagttataatta |
33416504 |
T |
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| Q |
115 |
acttttgtatttatcaaacatgatctaa |
142 |
Q |
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| T |
33416503 |
acttttgtatttatcaaacatgatctaa |
33416476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 33424674 - 33424566
Alignment:
| Q |
15 |
taggtatgtaaaagg-aaaaaataaatgtccatttggtttcaagtttatttagttcatagtcaattgcttaactaattagtgtatctcatagttataatt |
113 |
Q |
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||||||||||||||| |||||| |||| | ||||||||||||||||||||||||| ||| |||| ||| |||||| |||||| || | || |||||||| |
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| T |
33424674 |
taggtatgtaaaagggaaaaaacaaattttcatttggtttcaagtttatttagtttataatcaactgcataactagttagtgcatattatgattataatt |
33424575 |
T |
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| Q |
114 |
aacttttgt |
122 |
Q |
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||||||||| |
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| T |
33424574 |
aacttttgt |
33424566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 33410719 - 33410664
Alignment:
| Q |
67 |
ttcatagtcaattgcttaactaattagtgtatctcatagttataattaacttttgt |
122 |
Q |
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|||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33410719 |
ttcatattcaattgtttaactaattagtgtatctcataattataattaacttttgt |
33410664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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