View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17509_low_2 (Length: 440)
Name: NF17509_low_2
Description: NF17509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17509_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 16 - 425
Target Start/End: Original strand, 26751897 - 26752306
Alignment:
| Q |
16 |
atcaacatgagacaaagccaaaaaacttaactcatcatgagttttgttactacaagaaagttcaaaattgggtctacaaccttgagaactatcttgatca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26751897 |
atcaacatgagacaaagccaaaaaacttaactcatcatgagtcttgttactgcaagaaagttcaaaattgggtctacaaccttgagaactatcttgatca |
26751996 |
T |
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| Q |
116 |
ttaatccaaacataaccaggtagacaagaacactttctaccagtcaatggatcattactacaagtactattaggcccacaaattccatgaataaaacaag |
215 |
Q |
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| T |
26751997 |
ttaatccaaacataaccaggtagacaagaacactttctaccagtcaatggatcattactacaagtactattaggcccacaaattccatgaataaaacaag |
26752096 |
T |
|
| Q |
216 |
gttgttgacgaaattgacccgaaacaaaccaaccctgttcctcatcttttctactataaatgcgaacgttaccatcatgatcaagtgtaagtctacgttg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26752097 |
gttgttgacgaaattgacccgaaacaaaccaaccctgttcctcatcttttctactataaatgcgaacgttaccatcatgatcaagtgtaagtctacgttg |
26752196 |
T |
|
| Q |
316 |
caaaaaagttccataatcagcagtattaaaaacaaaatcatcagatgaactaaaactaccaaatgaatccaacgacgcgattctactactattgtaagta |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26752197 |
caaaaaagttccataatcagcagtattaaaaacaaaatcatcagaagaactaaaactaccaaacgaatccaacgacgcgattctactactattgtaagta |
26752296 |
T |
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| Q |
416 |
cttctggtac |
425 |
Q |
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||||| |||| |
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| T |
26752297 |
cttcttgtac |
26752306 |
T |
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