View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17509_low_3 (Length: 415)

Name: NF17509_low_3
Description: NF17509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17509_low_3
NF17509_low_3
[»] scaffold0012 (1 HSPs)
scaffold0012 (78-400)||(222037-222361)
[»] scaffold0053 (2 HSPs)
scaffold0053 (18-197)||(81246-81426)
scaffold0053 (199-237)||(79087-79125)
[»] scaffold0298 (2 HSPs)
scaffold0298 (205-400)||(626-811)
scaffold0298 (285-347)||(19411-19473)
[»] scaffold0096 (1 HSPs)
scaffold0096 (79-328)||(39411-39662)
[»] scaffold0124 (4 HSPs)
scaffold0124 (230-400)||(15823-15982)
scaffold0124 (29-232)||(35439-35644)
scaffold0124 (86-232)||(34276-34422)
scaffold0124 (285-347)||(10314-10378)
[»] scaffold0094 (1 HSPs)
scaffold0094 (18-237)||(52089-52309)
[»] chr4 (22 HSPs)
chr4 (79-323)||(15245115-15245362)
chr4 (78-235)||(8834795-8834954)
chr4 (79-237)||(15308020-15308181)
chr4 (93-237)||(13888557-13888702)
chr4 (299-395)||(27848520-27848615)
chr4 (29-232)||(14911932-14912137)
chr4 (285-361)||(8834987-8835060)
chr4 (27-237)||(18213616-18213828)
chr4 (156-232)||(15408117-15408194)
chr4 (205-259)||(27848664-27848719)
chr4 (357-394)||(17143418-17143455)
chr4 (169-235)||(3338353-3338418)
chr4 (285-332)||(3863202-3863248)
chr4 (285-332)||(3871959-3872005)
chr4 (169-235)||(8711518-8711586)
chr4 (18-49)||(14486501-14486532)
chr4 (192-235)||(14931124-14931167)
chr4 (198-232)||(13043769-13043803)
chr4 (285-345)||(15344993-15345050)
chr4 (177-232)||(11848112-11848168)
chr4 (260-300)||(13898795-13898835)
chr4 (285-317)||(30240105-30240137)
[»] chr6 (19 HSPs)
chr6 (101-235)||(25397097-25397231)
chr6 (18-235)||(25598484-25598702)
chr6 (29-235)||(2286764-2286972)
chr6 (28-232)||(24512844-24513046)
chr6 (78-268)||(19471301-19471490)
chr6 (205-332)||(29266368-29266494)
chr6 (299-394)||(31021571-31021664)
chr6 (324-389)||(16084602-16084666)
chr6 (324-394)||(23956993-23957064)
chr6 (357-394)||(23225709-23225746)
chr6 (177-237)||(23839197-23839258)
chr6 (285-317)||(18315037-18315069)
chr6 (177-235)||(4477856-4477915)
chr6 (182-232)||(25469705-25469755)
chr6 (353-394)||(17026220-17026261)
chr6 (288-344)||(19727688-19727743)
chr6 (177-237)||(23057937-23057998)
chr6 (26-126)||(9187344-9187444)
chr6 (177-232)||(29614147-29614203)
[»] scaffold0138 (1 HSPs)
scaffold0138 (78-341)||(12196-12459)
[»] scaffold0028 (3 HSPs)
scaffold0028 (18-237)||(69587-69806)
scaffold0028 (60-321)||(1943-2194)
scaffold0028 (285-317)||(91666-91698)
[»] scaffold0169 (1 HSPs)
scaffold0169 (27-235)||(6825-7034)
[»] scaffold0139 (1 HSPs)
scaffold0139 (18-235)||(14994-15211)
[»] chr8 (21 HSPs)
chr8 (29-235)||(21931549-21931755)
chr8 (93-361)||(19750466-19750730)
chr8 (18-237)||(18614114-18614332)
chr8 (324-394)||(18023327-18023398)
chr8 (324-391)||(8413602-8413670)
chr8 (262-361)||(38184569-38184667)
chr8 (324-399)||(11775844-11775920)
chr8 (285-332)||(22919875-22919920)
chr8 (285-332)||(19990003-19990049)
chr8 (81-237)||(23482048-23482203)
chr8 (324-394)||(36601481-36601552)
chr8 (271-317)||(22744773-22744819)
chr8 (152-232)||(14056564-14056644)
chr8 (152-232)||(25111951-25112031)
chr8 (285-317)||(20011181-20011213)
chr8 (285-317)||(21682750-21682782)
chr8 (169-235)||(32950886-32950954)
chr8 (271-317)||(20004771-20004817)
chr8 (202-257)||(15635070-15635125)
chr8 (177-232)||(44477621-44477677)
chr8 (177-232)||(44492779-44492835)
[»] scaffold0031 (2 HSPs)
scaffold0031 (78-235)||(121802-121961)
scaffold0031 (78-235)||(132679-132837)
[»] scaffold0335 (2 HSPs)
scaffold0335 (29-254)||(2607-2831)
scaffold0335 (299-396)||(7493-7589)
[»] chr1 (18 HSPs)
chr1 (29-235)||(11157944-11158151)
chr1 (151-268)||(20805294-20805410)
chr1 (18-235)||(18712641-18712857)
chr1 (205-331)||(24960887-24961012)
chr1 (86-232)||(19663517-19663663)
chr1 (28-237)||(32651425-32651632)
chr1 (324-394)||(634855-634925)
chr1 (27-237)||(16372801-16373014)
chr1 (285-347)||(52984325-52984384)
chr1 (271-317)||(25091334-25091380)
chr1 (177-237)||(20437019-20437080)
chr1 (285-317)||(41315305-41315337)
chr1 (285-347)||(35064640-35064699)
chr1 (198-259)||(21660387-21660448)
chr1 (198-235)||(18824633-18824670)
chr1 (169-237)||(52984209-52984279)
chr1 (285-332)||(20058587-20058632)
chr1 (204-259)||(28203729-28203784)
[»] scaffold0688 (1 HSPs)
scaffold0688 (299-395)||(5134-5229)
[»] scaffold0600 (1 HSPs)
scaffold0600 (29-235)||(585-791)
[»] chr3 (15 HSPs)
chr3 (29-235)||(16800878-16801086)
chr3 (324-394)||(16324391-16324462)
chr3 (18-235)||(18929086-18929303)
chr3 (357-394)||(42691-42728)
chr3 (168-259)||(52212405-52212498)
chr3 (285-332)||(43929494-43929539)
chr3 (177-235)||(9534326-9534385)
chr3 (169-235)||(52337953-52338021)
chr3 (356-394)||(3803991-3804029)
chr3 (198-232)||(12276814-12276848)
chr3 (177-237)||(14762753-14762814)
chr3 (288-344)||(17197629-17197685)
chr3 (288-344)||(17198095-17198151)
chr3 (176-235)||(17240510-17240570)
chr3 (169-232)||(18366515-18366580)
[»] chr2 (13 HSPs)
chr2 (78-268)||(24661477-24661666)
chr2 (18-235)||(23264984-23265200)
chr2 (327-394)||(20950727-20950795)
chr2 (169-257)||(26904387-26904477)
chr2 (81-235)||(23280115-23280268)
chr2 (18-102)||(21908201-21908285)
chr2 (177-237)||(6483716-6483777)
chr2 (177-237)||(6487183-6487244)
chr2 (172-235)||(21908353-21908417)
chr2 (35-237)||(9242817-9243021)
chr2 (169-257)||(21245667-21245757)
chr2 (184-232)||(23086403-23086452)
chr2 (202-257)||(10039036-10039091)
[»] scaffold0123 (1 HSPs)
scaffold0123 (300-396)||(1108-1204)
[»] chr7 (19 HSPs)
chr7 (300-396)||(21730641-21730736)
chr7 (26-232)||(21230960-21231165)
chr7 (78-235)||(46625861-46626020)
chr7 (300-396)||(13864208-13864305)
chr7 (136-235)||(11382868-11382967)
chr7 (18-232)||(13679336-13679548)
chr7 (18-108)||(13664773-13664863)
chr7 (136-235)||(11389345-11389444)
chr7 (285-317)||(45186521-45186553)
chr7 (177-235)||(16009575-16009634)
chr7 (169-235)||(40554515-40554583)
chr7 (285-315)||(39431102-39431132)
chr7 (177-237)||(14422983-14423044)
chr7 (177-237)||(15168174-15168235)
chr7 (152-232)||(20311052-20311133)
chr7 (285-317)||(12695673-12695705)
chr7 (285-317)||(15143275-15143307)
chr7 (285-313)||(16069561-16069589)
chr7 (202-254)||(42042187-42042238)
[»] scaffold0004 (1 HSPs)
scaffold0004 (18-237)||(116738-116956)
[»] chr5 (14 HSPs)
chr5 (330-400)||(30344538-30344608)
chr5 (18-235)||(18407941-18408157)
chr5 (324-394)||(33472414-33472485)
chr5 (152-232)||(22438748-22438829)
chr5 (27-237)||(22340908-22341121)
chr5 (81-237)||(23111195-23111350)
chr5 (271-317)||(21889626-21889672)
chr5 (271-315)||(25014626-25014670)
chr5 (198-237)||(8952036-8952075)
chr5 (177-235)||(19512385-19512444)
chr5 (177-235)||(28370052-28370111)
chr5 (198-235)||(22777067-22777104)
chr5 (169-232)||(21663143-21663208)
chr5 (177-232)||(38144537-38144593)
[»] scaffold0121 (1 HSPs)
scaffold0121 (285-347)||(10328-10390)
[»] scaffold0222 (1 HSPs)
scaffold0222 (21-235)||(16665-16878)
[»] scaffold0019 (2 HSPs)
scaffold0019 (26-232)||(135322-135528)
scaffold0019 (27-237)||(34288-34500)
[»] scaffold0235 (1 HSPs)
scaffold0235 (86-231)||(22594-22738)
[»] scaffold0815 (1 HSPs)
scaffold0815 (152-236)||(1424-1508)
[»] scaffold0107 (2 HSPs)
scaffold0107 (152-232)||(40532-40613)
scaffold0107 (169-235)||(3874-3942)
[»] scaffold0317 (1 HSPs)
scaffold0317 (18-232)||(1229-1441)
[»] scaffold1555 (1 HSPs)
scaffold1555 (324-394)||(294-365)
[»] scaffold0180 (1 HSPs)
scaffold0180 (353-394)||(11806-11847)
[»] scaffold0057 (1 HSPs)
scaffold0057 (260-305)||(1138-1183)
[»] scaffold0461 (1 HSPs)
scaffold0461 (26-235)||(5-213)
[»] scaffold0395 (1 HSPs)
scaffold0395 (285-341)||(1264-1319)
[»] scaffold0037 (2 HSPs)
scaffold0037 (293-339)||(71242-71287)
scaffold0037 (27-237)||(71338-71550)
[»] scaffold0429 (1 HSPs)
scaffold0429 (169-237)||(1995-2065)
[»] scaffold0001 (1 HSPs)
scaffold0001 (353-394)||(176952-176993)
[»] scaffold1290 (1 HSPs)
scaffold1290 (285-317)||(330-362)
[»] scaffold0575 (1 HSPs)
scaffold0575 (285-317)||(9564-9596)
[»] scaffold0377 (2 HSPs)
scaffold0377 (285-344)||(4253-4312)
scaffold0377 (285-344)||(8292-8351)
[»] scaffold0054 (2 HSPs)
scaffold0054 (285-317)||(59515-59547)
scaffold0054 (285-317)||(61079-61111)
[»] scaffold0026 (3 HSPs)
scaffold0026 (285-317)||(36640-36672)
scaffold0026 (177-232)||(11851-11907)
scaffold0026 (177-232)||(111684-111740)
[»] scaffold0020 (1 HSPs)
scaffold0020 (176-235)||(101925-101985)
[»] scaffold0562 (1 HSPs)
scaffold0562 (285-332)||(2779-2825)
[»] scaffold0127 (1 HSPs)
scaffold0127 (29-108)||(10094-10172)
[»] scaffold0016 (1 HSPs)
scaffold0016 (285-347)||(173997-174056)
[»] scaffold0282 (1 HSPs)
scaffold0282 (287-317)||(23127-23157)
[»] scaffold0201 (1 HSPs)
scaffold0201 (271-332)||(27366-27427)
[»] scaffold1276 (1 HSPs)
scaffold1276 (202-259)||(1160-1217)
[»] scaffold0371 (1 HSPs)
scaffold0371 (184-232)||(8526-8575)
[»] scaffold0352 (1 HSPs)
scaffold0352 (289-334)||(4398-4442)
[»] scaffold0337 (1 HSPs)
scaffold0337 (192-237)||(8765-8810)
[»] scaffold0310 (1 HSPs)
scaffold0310 (160-232)||(17625-17698)
[»] scaffold0273 (1 HSPs)
scaffold0273 (198-235)||(7693-7730)
[»] scaffold0106 (1 HSPs)
scaffold0106 (260-297)||(37157-37194)
[»] scaffold0042 (1 HSPs)
scaffold0042 (248-281)||(53898-53931)
[»] scaffold0962 (1 HSPs)
scaffold0962 (169-232)||(616-681)
[»] scaffold0924 (1 HSPs)
scaffold0924 (177-232)||(751-807)
[»] scaffold0635 (1 HSPs)
scaffold0635 (202-257)||(7979-8034)
[»] scaffold0247 (1 HSPs)
scaffold0247 (177-232)||(11340-11396)
[»] scaffold0203 (1 HSPs)
scaffold0203 (299-365)||(16285-16348)
[»] scaffold0154 (1 HSPs)
scaffold0154 (177-232)||(30856-30912)
[»] scaffold0146 (1 HSPs)
scaffold0146 (176-235)||(13630-13690)


Alignment Details
Target: scaffold0012 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 78 - 400
Target Start/End: Complemental strand, 222361 - 222037
Alignment:
Q  78 attctaagcacattaaacatgattcctacacttttcctttctaaatcagtaatagaatcctaattca-caattcctatctcaagaacaatttatgttaaa 176  Q
    |||||||||| | | ||||||  |||||||||||||   || ||||||||| ||||| ||||||||  |||||| ||| |||||| ||||| ||||||||    
T  222361 attctaagcataattaacatgtctcctacacttttcaactcaaaatcagtattagaaccctaattccgcaattcttatttcaagagcaattcatgttaaa 222262  T
Q  177 tcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttaccttaatttacgaatcaaagctctacaaaatccagaatctttctctct 275  Q
    ||||||||||||| ||||||||||  |||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  222261 tcaattttcagaagttatatattacaatcattgaaagttagcctcacccttaccttaatttatgaatcaaagctctacaaaatccaaaatctttctctct 222162  T
Q  276 tggctcctattggctcttctccctttttctcccaaaagctcttgtttctacgtgaaaactgtttctctgactcttggttctattttctaataactcagta 375  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  222161 tggctcctcttggctcttctccctttttctcccaaaagctcttgtttctacgtgaaaactgtttctctgactctcggttctattttctaataactcagta 222062  T
Q  376 aaacataacctcccacttatttctt 400  Q
    |||||||||||||||||||||||||    
T  222061 aaacataacctcccacttatttctt 222037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 141; Significance: 8e-74; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 81426 - 81246
Alignment:
Q  18 aatctccctcaaattctgattacaacaacattctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatgattcctacacttttccttt 117  Q
    |||||||||||||||||||||||| ||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  81426 aatctccctcaaattctgattacagcaatattctaaattttgaaatcaatctgaacacgaattctaagcacattaaacatgattcctacacttttccctt 81327  T
Q  118 ctaaatcagtaatagaatcctaattcacaattcctatctcaagaacaatttatgttaaatcaattttcag-aattatatat 197  Q
    | ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  81326 caaaatcagtaatagaaccctaattcacatttcctatctcaagaacaatttatgttaaatcaattttcagaaattatatat 81246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 237
Target Start/End: Complemental strand, 79125 - 79087
Alignment:
Q  199 atgatcattgagagttagcatcacccttaccttaattta 237  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  79125 atgatcattgagagttagcctcacccttaccttaattta 79087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0298 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: scaffold0298
Description:

Target: scaffold0298; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 205 - 400
Target Start/End: Original strand, 626 - 811
Alignment:
Q  205 attgagagttagcatcacccttaccttaatttacgaatcaaagctctacaaaatccagaatctttctctcttggctcctattggctcttctccctttttc 304  Q
    ||||||||||||  ||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||          ||||||||||||||||    
T  626 attgagagttagtctcacccttaccttaatttatgaatcaaagctctacaaaatcgagcatctttctctcttgg----------ctcttctccctttttc 715  T
Q  305 tcccaaaagctcttgtttctacgtgaaaactgtttctctgactcttggttctattttctaataactcagtaaaacataacctcccacttatttctt 400  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  716 tcccaaaagctcttgtttctacgtgaaaattgtttctctgactcttggttctattttctaataactcagtaaaatataacctcccacttatttctt 811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0298; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 285 - 347
Target Start/End: Original strand, 19411 - 19473
Alignment:
Q  285 ttggctcttctccctttttctcccaaaagctcttgtttctacgtgaaaactgtttctctgact 347  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19411 ttggttcttctccctttttctcccaaaagctcttgtttctatgtgaaaactgtttctctgact 19473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 79 - 328
Target Start/End: Complemental strand, 39662 - 39411
Alignment:
Q  79 ttctaagcacattaaacatgattcctacactttt-cctttctaaatcagtaatagaatcctaattcacaattcctatctcaagaacaatttatgttaaat 177  Q
    ||||||||| | | |||||||||||||||||||| || ||| ||||||||| ||| | |||||||||||||||||||||||||||||||| |  ||||||    
T  39662 ttctaagcataatcaacatgattcctacactttttcccttcaaaatcagtagtagtaccctaattcacaattcctatctcaagaacaattcaatttaaat 39563  T
Q  178 caattttcag-aattatatattatgatcattgagagttagcatcacccttaccttaattt--acgaatcaaagctctacaaaatccagaatctttctctc 274  Q
    |||||||| | |||||||||||||||||||||||||||||| |||||||||||||  |||  | |||| ||  ||||||||| | || |||||||||| |    
T  39562 caattttctgaaattatatattatgatcattgagagttagcctcacccttacctttgtttagatgaatgaa--ctctacaaact-cacaatctttctccc 39466  T
Q  275 ttggctcctattggctcttctccctttttct-cccaaaagctcttgtttctacgt 328  Q
    ||||||| | |||||||||||||| |||||| |||||||||||||||||||||||    
T  39465 ttggctcttcttggctcttctccccttttctccccaaaagctcttgtttctacgt 39411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 108; Significance: 4e-54; HSPs: 4)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 230 - 400
Target Start/End: Complemental strand, 15982 - 15823
Alignment:
Q  230 ttaatttacgaatcaaagctctacaaaatccagaatctttctctcttggctcctattggctcttctccctttttctcccaaaagctcttgtttctacgtg 329  Q
    |||||||| ||||||||||||||||||||| || ||||||||||||||||||          ||||||||||| ||||||||||||||||||||||||||    
T  15982 ttaatttatgaatcaaagctctacaaaatcgagcatctttctctcttggctc----------ttctccctttt-ctcccaaaagctcttgtttctacgtg 15894  T
Q  330 aaaactgtttctctgactcttggttctattttctaataactcagtaaaacataacctcccacttatttctt 400  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  15893 aaaattgtttctctgactcttggttctattttctaataactcagtaaaatataacctcccacttatttctt 15823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 29 - 232
Target Start/End: Complemental strand, 35644 - 35439
Alignment:
Q  29 aattctgattacaacaacatt-ctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatgattcctacacttttcctttctaaatcagt 127  Q
    |||||||||||||||||  || |||||| |||||| | |||| |||| || ||||||||| | | ||||||  |||||||||||||   || ||||||||    
T  35644 aattctgattacaacaatgttactaaatcctgaaaacgatctgaacatga-ttctaagcataattaacatgtctcctacacttttcaactcaaaatcagt 35546  T
Q  128 aatagaatcctaattcac-aattcctatctcaagaacaatttatgttaaatcaattttcagaa-ttatatattatgatcattgagagttagcatcaccct 225  Q
    | ||||| |||||||| | ||||||||| |||||||||||| ||||||||||||||||||||| ||||| ||||  |||||||||||||||  | |||||    
T  35545 attagaaccctaattccccaattcctatttcaagaacaattcatgttaaatcaattttcagaagttatacattacaatcattgagagttagtcttaccct 35446  T
Q  226 tacctta 232  Q
    |||||||    
T  35445 tacctta 35439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 86 - 232
Target Start/End: Complemental strand, 34422 - 34276
Alignment:
Q  86 cacattaaacatgattcctacacttttcctttctaaatcagtaatagaatcctaattcacaattcctat-ctcaagaacaatttatgttaaatcaatttt 184  Q
    |||||||||||| |||| |||||  |||||||| ||||||| |  |  | |||||||| |||||  ||| ||||||||||||| |||||||| |||||||    
T  34422 cacattaaacataattcttacaccattcctttcaaaatcagcatca--accctaattcccaatttttattctcaagaacaattcatgttaaaacaatttt 34325  T
Q  185 cag-aattatatattatgatcattgagagttagcatcacccttacctta 232  Q
    ||| ||||||||| |||||| || ||||| |||  ||||||||||||||    
T  34324 cagaaattatatactatgattatcgagagatagtctcacccttacctta 34276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 285 - 347
Target Start/End: Original strand, 10314 - 10378
Alignment:
Q  285 ttggctcttctccctttttctcccaaaagctcttgtttc-tacgtgaaaactg-tttctctgact 347  Q
    |||| |||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||    
T  10314 ttggttcttctccctttttctcccaaaagctcttgtttcttatgtgaaaactgttttctctgact 10378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 52089 - 52309
Alignment:
Q  18 aatctccctcaaattctgattacaacaacattctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatgattcctacacttttccttt 117  Q
    |||||||||||||||||||||||| ||| |||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  52089 aatctccctcaaattctgattacagcaatattctagattctgaaatcaatctgaacatgaattctaagcacattaaacatgattcctacacttttccttt 52188  T
Q  118 ctaaatcagtaatagaatcctaattcacaattccta-tctcaagaacaatttatgttaaatcaattttca-gaattatatattatgatcattgagagtta 215  Q
    | ||||| || |||||| |||||||| | |||  || | |||||||||||| |  | |||||||||||||  ||| ||||||||| ||||||||  ||||    
T  52189 caaaatcggt-atagaaccctaattctcgatttttattttcaagaacaattcaaatcaaatcaattttcataaatcatatattataatcattgaaggtta 52287  T
Q  216 gcatcacccttaccttaattta 237  Q
    || |||||||||||||||||||    
T  52288 gcctcacccttaccttaattta 52309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 6e-53; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 79 - 323
Target Start/End: Original strand, 15245115 - 15245362
Alignment:
Q  79 ttctaagcacattaaacatgattcctacactttt--cctttctaaatcagtaatagaatcctaattcacaattcctatctcaagaacaatttatgttaaa 176  Q
    ||||||||| | | ||||||||||||||||||||  |||| | ||||||||||||||| ||||||||| ||||||| |||||||||||||| ||||||||    
T  15245115 ttctaagcataatcaacatgattcctacactttttcccttccaaaatcagtaatagaaccctaattcataattcctttctcaagaacaattcatgttaaa 15245214  T
Q  177 tcaattttcag-aattatatattatgatcattgagagttagcatcacccttaccttaattt--acgaatcaaagctctacaaaatccagaatctttctct 273  Q
    ||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||  | |||| ||   |||||||| | ||||||||| |||     
T  15245215 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttaccttaatttagatgaatgaa--ttctacaaact-cagaatcttcctcc 15245311  T
Q  274 cttggctcctattggctcttctcc-ctttttctcccaaaagctcttgtttc 323  Q
    |||||||| | |||||||||||||  |||||||||||| | ||||||||||    
T  15245312 cttggctcttcttggctcttctcctttttttctcccaagaactcttgtttc 15245362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 78 - 235
Target Start/End: Original strand, 8834795 - 8834954
Alignment:
Q  78 attctaagcacattaaacatgattcctacactttt-cctttctaaatcagtaatagaatcctaattcacaattcctatctcaagaacaatttatgttaaa 176  Q
    |||||||||| | | |||||||||||||||||||| || ||| | | ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||    
T  8834795 attctaagcataattaacatgattcctacactttttcccttcaataacagtaatagaaccctaattctcaattcctatttcaagaacaattcatgttaaa 8834894  T
Q  177 tcaattttcag-aattatatattatgatcattgagagttagcatcacccttaccttaatt 235  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  8834895 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttaccttaatt 8834954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 79 - 237
Target Start/End: Original strand, 15308020 - 15308181
Alignment:
Q  79 ttctaagcacattaaacatgattcctacactttt--cctttctaaatcagtaatagaatcctaattcacaattcctatctcaagaacaatttatgttaaa 176  Q
    ||||||||| | | ||||||||||||||||||||  |||| | ||||||||||||||| ||||||||| ||||||| |||||||||||||| ||||||||    
T  15308020 ttctaagcataatcaacatgattcctacactttttcccttccaaaatcagtaatagaaccctaattcataattcctttctcaagaacaattcatgttaaa 15308119  T
Q  177 tcaattttcag-aattatatattatgatcattgagagttagcatcacccttaccttaattta 237  Q
    ||||||||||| |||||||||||| ||||||||||||||||| ||||||||| |||||||||    
T  15308120 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttaacttaattta 15308181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 93 - 237
Target Start/End: Original strand, 13888557 - 13888702
Alignment:
Q  93 aacatgattcctacactttt-cctttctaaatcagtaatagaatcctaattcacaattcctatctcaagaacaatttatgttaaatcaattttcagaa-t 190  Q
    |||||||||||||||||||| || ||| |||||||||| |||| |||||||||||||||||||||||| | ||||| ||||||||||||||||||||| |    
T  13888557 aacatgattcctacactttttcccttcaaaatcagtaacagaaccctaattcacaattcctatctcaa-agcaattcatgttaaatcaattttcagaaat 13888655  T
Q  191 tatatattatgatcattgagagttagcatcacccttaccttaattta 237  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||    
T  13888656 tatacattatgatcattgagagttagcctcacccttaccttaattta 13888702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 299 - 395
Target Start/End: Complemental strand, 27848615 - 27848520
Alignment:
Q  299 tttttctcccaaaagctcttgtttctacgtgaaaactgtttctctgactcttggttctattttctaataactcagtaaaacataacctcccacttat 395  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27848615 tttttctcccaaaa-ctcttgtttctacgtgaaaactgtttctctgactcttggttctattttctaataactcagtaaaacataacctctcacttat 27848520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 29 - 232
Target Start/End: Original strand, 14911932 - 14912137
Alignment:
Q  29 aattctgattacaacaacatt-ctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatgattcctacacttttcctttctaaatcagt 127  Q
    |||||||||||||||||  || |||||| |||||| | |||| |||| || ||||||||| | | ||||||   ||||||||||||   || ||||| ||    
T  14911932 aattctgattacaacaatgttactaaatcctgaaaacgatctgaacatga-ttctaagcataattaacatgtcacctacacttttcaactcaaaatctgt 14912030  T
Q  128 aatagaatcctaattcac-aattcctatctcaagaacaatttatgttaaatcaattttcagaa-ttatatattatgatcattgagagttagcatcaccct 225  Q
    | ||||| |||||||| | ||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||  |||||||||||||||  | |||||    
T  14912031 attagaaccctaattccccaattcctatttcaagaacaattcatgttaaatcaattttcagaagttatatattacaatcattgagagttagtctaaccct 14912130  T
Q  226 tacctta 232  Q
    |||||||    
T  14912131 tacctta 14912137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 8834987 - 8835060
Alignment:
Q  285 ttggctcttctccctttttctcccaaaagctcttgtttctacgtgaaaactgtttctctgactcttggttctatttt 361  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||  |||||||||||||||||||||    
T  8834987 ttggctcttctccctttttctcccaaaagctcttgtttctacgt-aaaacagtt--tctgactcttggttctatttt 8835060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 18213616 - 18213828
Alignment:
Q  27 caaattctgattacaacaacattctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatgattcct-acacttttcctttctaaatca 125  Q
    ||||||| ||||||||||||||| ||| | || ||||| |||| || | |||||||||||| | | ||||||| |||| || |||||| || | ||||||    
T  18213616 caaattcggattacaacaacattataattcctaaaatcgatctgaatatgaattctaagcataattaacatgaatccttactcttttc-ttccaaaatca 18213714  T
Q  126 gtaatagaatcctaattcacaattcctatct--caagaacaatttatgttaaatcaattttcagaatt-atatattatgatcattgagagttagcatcac 222  Q
    ||| ||||| |||||||| |||||| ||| |  |||||||||||    | ||| |||||||||||| | ||||||||| ||||||||  |||||| ||||    
T  18213715 gta-tagaaccctaattcccaattcttatttttcaagaacaattctaatcaaaacaattttcagaaatcatatattataatcattgaaggttagcctcac 18213813  T
Q  223 ccttaccttaattta 237  Q
    |||||||||||||||    
T  18213814 ccttaccttaattta 18213828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 15408117 - 15408194
Alignment:
Q  156 tcaagaacaatttatgttaaatcaattttcag-aattatatattatgatcattgagagttagcatcacccttacctta 232  Q
    |||||||||||| |||||||| |||||||||| ||||||||| |||||| |||||||| |||  ||||||||||||||    
T  15408117 tcaagaacaattcatgttaaaacaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 15408194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 259
Target Start/End: Complemental strand, 27848719 - 27848664
Alignment:
Q  205 attgagagttagcatcacccttaccttaattt-acgaatcaaagctctacaaaatc 259  Q
    ||||||||| | | |||||||||||||||||| |||||||||||||||||||||||    
T  27848719 attgagagtaaacctcacccttaccttaatttgacgaatcaaagctctacaaaatc 27848664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 394
Target Start/End: Original strand, 17143418 - 17143455
Alignment:
Q  357 attttctaataactcagtaaaacataacctcccactta 394  Q
    |||||||||||| |||||||||||||||||||||||||    
T  17143418 attttctaataattcagtaaaacataacctcccactta 17143455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 3338353 - 3338418
Alignment:
Q  169 atgttaaatcaattttcagaatt-atatattatgatcattgagagttagcatcacccttaccttaatt 235  Q
    ||||||| ||||||| ||||||| |||||| ||||| ||||||||||||| |||||||||||||||||    
T  3338353 atgttaactcaattt-cagaattcatatat-atgattattgagagttagcctcacccttaccttaatt 3338418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 3863248 - 3863202
Alignment:
Q  285 ttggctcttctccctttttctcccaaaagctcttgtttctacgtgaaa 332  Q
    |||||||||||||||||||||||||||| ||| ||||| |||||||||    
T  3863248 ttggctcttctccctttttctcccaaaaactc-tgtttgtacgtgaaa 3863202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 3872005 - 3871959
Alignment:
Q  285 ttggctcttctccctttttctcccaaaagctcttgtttctacgtgaaa 332  Q
    |||||||||||||||||||||||||||| ||| ||||| |||||||||    
T  3872005 ttggctcttctccctttttctcccaaaaactc-tgtttgtacgtgaaa 3871959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 8711518 - 8711586
Alignment:
Q  169 atgttaaatcaattttcagaatt---atatattatgatcattgagagttagcatcacccttaccttaatt 235  Q
    ||||||||||||||| |||||||   ||| | |||||| ||||||||||||| |||||||||||||||||    
T  8711518 atgttaaatcaattt-cagaatttacatacactatgattattgagagttagcttcacccttaccttaatt 8711586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 14486501 - 14486532
Alignment:
Q  18 aatctccctcaaattctgattacaacaacatt 49  Q
    ||||||||||||||||||||||||||||||||    
T  14486501 aatctccctcaaattctgattacaacaacatt 14486532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 192 - 235
Target Start/End: Complemental strand, 14931167 - 14931124
Alignment:
Q  192 atatattatgatcattgagagttagcatcacccttaccttaatt 235  Q
    ||||| |||||| ||||||||||||| |||||||||||||||||    
T  14931167 atatactatgattattgagagttagcctcacccttaccttaatt 14931124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 232
Target Start/End: Complemental strand, 13043803 - 13043769
Alignment:
Q  198 tatgatcattgagagttagcatcacccttacctta 232  Q
    |||||| ||||||||||||||||||||||||||||    
T  13043803 tatgattattgagagttagcatcacccttacctta 13043769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 345
Target Start/End: Original strand, 15344993 - 15345050
Alignment:
Q  285 ttggctcttctccctttttctcccaaaagctcttgtttctacgtgaaaactgtttctctga 345  Q
    |||||| ||||||||||||||||||||||  ||||||| |||||| ||||||||| |||||    
T  15344993 ttggcttttctccctttttctcccaaaag--cttgtttttacgtg-aaactgtttttctga 15345050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 11848112 - 11848168
Alignment:
Q  177 tcaattttcag-aattatatattatgatcattgagagttagcatcacccttacctta 232  Q
    ||||||||||| ||||||| |||||||| |||||||| |||  ||||||||||||||    
T  11848112 tcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 11848168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 300
Target Start/End: Complemental strand, 13898835 - 13898795
Alignment:
Q  260 cagaatctttctctcttggctcctattggctcttctccctt 300  Q
    |||||||||||||| ||||||| | ||||||||||||||||    
T  13898835 cagaatctttctctattggctcttcttggctcttctccctt 13898795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 317
Target Start/End: Original strand, 30240105 - 30240137
Alignment:
Q  285 ttggctcttctccctttttctcccaaaagctct 317  Q
    ||||||||||||||||||||||||||| |||||    
T  30240105 ttggctcttctccctttttctcccaaaggctct 30240137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 1e-51; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 101 - 235
Target Start/End: Original strand, 25397097 - 25397231
Alignment:
Q  101 tcctacacttttcctttctaaatcagtaatagaatcctaattcacaattcctatctcaagaacaatttatgttaaatcaattttcag-aattatatatta 199  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  25397097 tcctacacttttcctttcaaaatcagtaatagaaccctaattcacaattcctatctcaagaacaa-ttatgttaaatcaattttcagaaattatatatta 25397195  T
Q  200 tgatcattgagagttagcatcacccttaccttaatt 235  Q
    ||||||| |||||||||| |||||||||||||||||    
T  25397196 tgatcatcgagagttagcctcacccttaccttaatt 25397231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 25598484 - 25598702
Alignment:
Q  18 aatctccctcaaattctgattacaacaacattctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatgattcctacacttttccttt 117  Q
    ||||||||||||||||||||| || |||||||||||||  |  |||||||||  | | ||||||||||||||||||||||| ||||||||||||||||||    
T  25598484 aatctccctcaaattctgattccagcaacattctaaatattataatcaatctgcatatgaattctaagcacattaaacatgtttcctacacttttccttt 25598583  T
Q  118 ctaaatcagtaatagaatcctaattcacaattccta-tctcaagaacaatttatgttaaatcaattttcag-aattatatattatgatcattgagagtta 215  Q
    | ||||| |  | |||| |||||||| ||||  ||| | |||||||||| | ||||||||||||||||||| || |||||||||||||||||||||||||    
T  25598584 caaaatcggcca-agaaccctaattcccaatctctattttcaagaacaactcatgttaaatcaattttcagaaaatatatattatgatcattgagagtta 25598682  T
Q  216 gcatcacccttaccttaatt 235  Q
    |  |||||||||||| ||||    
T  25598683 gtctcacccttacctgaatt 25598702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 29 - 235
Target Start/End: Complemental strand, 2286972 - 2286764
Alignment:
Q  29 aattctgattacaacaacatt-ctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatgattcctacacttttcctttctaaatcagt 127  Q
    |||||||||||||||||  || |||||| ||||||   ||||||||| || ||||||||| | | ||||||  |||||||||||||   || ||||||||    
T  2286972 aattctgattacaacaatgttactaaatcctgaaaatgatctaaacatga-ttctaagcataattaacatgtctcctacacttttcaactcaaaatcagt 2286874  T
Q  128 aatagaatcctaattcac-aattcctatctcaagaacaatttatgttaaatcaattttcagaa-ttatatattatgatcattgagagttagcatcaccct 225  Q
    | ||||| |||||||| | ||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||  |||||||||||||||  |||||||    
T  2286873 attagaaccctaattccccaattcctatttcaagaacaattcatgttaaatcaattttcagaagttatatattacaatcattgagagttagtctcaccct 2286774  T
Q  226 taccttaatt 235  Q
    ||||| ||||    
T  2286773 tacctgaatt 2286764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 28 - 232
Target Start/End: Complemental strand, 24513046 - 24512844
Alignment:
Q  28 aaattctgattacaacaacattctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatgattcctacacttttcctttctaaatcagt 127  Q
    |||||||||| ||||||||||| || ||   ||||||| ||| || |||||  |||| |||||||| ||||||||||||||||| |||| | ||||||||    
T  24513046 aaattctgatcacaacaacattatagatcaagaaatcattctgaatacgaaaactaaacacattaa-catgattcctacactttccctt-caaaatcagt 24512949  T
Q  128 aatagaatcctaattcacaattcctatctcaagaacaatttatgttaaatcaattttcag-aattatatattatgatcattgagagttagcatcaccctt 226  Q
    | ||||| |||||||| |||||  |||||||||||||||| |||||||| |||||||||| ||||||||| |||||| |||||||| |||  |||||||     
T  24512948 a-tagaaccctaattcccaatttttatctcaagaacaattcatgttaaaacaattttcagaaattatatactatgattattgagagatagtctcaccctc 24512850  T
Q  227 acctta 232  Q
    ||||||    
T  24512849 acctta 24512844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 78 - 268
Target Start/End: Complemental strand, 19471490 - 19471301
Alignment:
Q  78 attctaagcacattaaacatgattcctacacttttcctttctaaatcagtaatagaatcctaattcac-aattcctatctcaagaacaatttatgttaaa 176  Q
    |||||||||| | | ||||||  |||||||||||||   || ||||||||| ||||| |||||||| | ||||| ||| ||||||||| || ||||||||    
T  19471490 attctaagcataattaacatgtctcctacacttttcaactcaaaatcagtattagaaccctaattccccaattcttatttcaagaaca-ttcatgttaaa 19471392  T
Q  177 tcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttaccttaatttacgaatcaaagctctacaaaatccagaatctt 268  Q
    ||||||| ||||| ||||||||||||||||| ||||| |||| ||||||||||||||||| |   |||||| ||||||||||| |||||||||    
T  19471391 tcaatttccagaaattatatattatgatcatcgagaggtagcctcacccttaccttaattga-acatcaaa-ctctacaaaattcagaatctt 19471301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 205 - 332
Target Start/End: Original strand, 29266368 - 29266494
Alignment:
Q  205 attgagagttagcatcacccttaccttaattta--cgaatcaaagctctacaaaatccagaatctttctctcttggctcctattggctcttctccctttt 302  Q
    ||||||||| | | ||||||||||||||||| |  |||| |||| ||||||||||| ||||||||| |||||||||||| | | ||||||||||||||||    
T  29266368 attgagagtaaacctcacccttaccttaattcagacgaa-caaa-ctctacaaaattcagaatcttcctctcttggctcttctaggctcttctccctttt 29266465  T
Q  303 tctcccaaaagctcttgtttctacgtgaaa 332  Q
    |||||||||||||| ||||| |||||||||    
T  29266466 tctcccaaaagctc-tgtttgtacgtgaaa 29266494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 394
Target Start/End: Complemental strand, 31021664 - 31021571
Alignment:
Q  299 tttttctcccaaaagctcttgtttctacgtgaaaactgtttctctgactcttggtt-ctattttctaataactcagtaaaacataacctcccactta 394  Q
    |||||||||||||| |||| |||| ||||||||||||||||||||||||    ||| |||||||||||||| |||||||||||||||||||||||||    
T  31021664 tttttctcccaaaa-ctct-gttt-tacgtgaaaactgtttctctgactgacagtttctattttctaataattcagtaaaacataacctcccactta 31021571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 324 - 389
Target Start/End: Original strand, 16084602 - 16084666
Alignment:
Q  324 tacgtgaaaactgtttctctgactcttggttctattttctaataactcagt-aaaacataacctccc 389  Q
    ||||||||||| ||||||  ||||||||||||||||||||||||||||||| |||||||||||||||    
T  16084602 tacgtgaaaacagtttct--gactcttggttctattttctaataactcagtaaaaacataacctccc 16084666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 324 - 394
Target Start/End: Original strand, 23956993 - 23957064
Alignment:
Q  324 tacgtgaaaactgtttctctgactcttggtt-ctattttctaataactcagtaaaacataacctcccactta 394  Q
    ||||||||||||||||||||||||  | ||| | |||||||||||| |||||||||||||||||||||||||    
T  23956993 tacgtgaaaactgtttctctgactgatagtttccattttctaataattcagtaaaacataacctcccactta 23957064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 394
Target Start/End: Complemental strand, 23225746 - 23225709
Alignment:
Q  357 attttctaataactcagtaaaacataacctcccactta 394  Q
    |||||||||||| |||||||||||||||||||||||||    
T  23225746 attttctaataattcagtaaaacataacctcccactta 23225709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 23839197 - 23839258
Alignment:
Q  177 tcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttaccttaattta 237  Q
    ||||||||||||| ||||| |||||||| |||||||| |||  |||||||||||||||||||    
T  23839197 tcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttaattta 23839258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 18315069 - 18315037
Alignment:
Q  285 ttggctcttctccctttttctcccaaaagctct 317  Q
    |||||||||||||||||||||||||||||||||    
T  18315069 ttggctcttctccctttttctcccaaaagctct 18315037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 4477856 - 4477915
Alignment:
Q  177 tcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttaccttaatt 235  Q
    ||||||||||||| ||||| |||||||| |||||||| |||  |||||||||||||||||    
T  4477856 tcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttaatt 4477915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 25469755 - 25469705
Alignment:
Q  182 tttcagaattatatattatgatcattgagagttagcatcacccttacctta 232  Q
    ||||||||||||| |||||||| |||||||| |||  ||||||||||||||    
T  25469755 tttcagaattatagattatgattattgagagatagtctcacccttacctta 25469705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 394
Target Start/End: Complemental strand, 17026261 - 17026220
Alignment:
Q  353 ttctattttctaataactcagtaaaacataacctcccactta 394  Q
    ||||||||||||| || ||||||||||||||||||| |||||    
T  17026261 ttctattttctaacaattcagtaaaacataacctcctactta 17026220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 19727688 - 19727743
Alignment:
Q  288 gctcttctc-cctttttctcccaaaagctcttgtttctacgtgaaaactgtttctctg 344  Q
    ||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||    
T  19727688 gctcttctctcctttttctcccaaaag-tcttgtttctacgt-aaaacagtttctctg 19727743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 23057937 - 23057998
Alignment:
Q  177 tcaattttcag-aattatatattatgatcattgagagttagcatcacccttaccttaattta 237  Q
    ||||||||||| ||||||| |||||||| || ||||| |||  |||||||||||||||||||    
T  23057937 tcaattttcaggaattatagattatgattatcgagagatagtctcacccttaccttaattta 23057998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 126
Target Start/End: Original strand, 9187344 - 9187444
Alignment:
Q  26 tcaaattctgattacaacaacattctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatgattcctacacttttcctttctaaatca 125  Q
    |||||||||||| ||||||||||| || |||  ||||||| ||| ||||| || |   | ||||||||||||||||| ||||   |||||||| ||||||    
T  9187344 tcaaattctgatcacaacaacattatagattaagaaatcattctgaacactaaattacaacacattaaacatgattcttacatcattcctttcaaaatca 9187443  T
Q  126 g 126  Q
    |    
T  9187444 g 9187444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 29614203 - 29614147
Alignment:
Q  177 tcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttacctta 232  Q
    ||||||||||||| ||||| |||||||| |||||||| |||  ||||||||||||||    
T  29614203 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 29614147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 78 - 341
Target Start/End: Original strand, 12196 - 12459
Alignment:
Q  78 attctaagcacattaaacatgattcctacacttttcctttctaaatcagtaatagaatcctaattcac-aattcctatctcaagaacaatttatgttaaa 176  Q
    |||||||||| | | ||||||  |||||||||||||   || ||||||||| ||||| |||||||| | ||||| ||| |||||||||||| ||||  ||    
T  12196 attctaagcataattaacatgtctcctacacttttcaactcaaaatcagtattagaaccctaattccccaattcgtatttcaagaacaattcatgtggaa 12295  T
Q  177 tcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttaccttaattt--acgaatcaaagctctacaaaatccagaatctttctct 273  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||  | |||| ||  ||||||||| | |||||||||||||     
T  12296 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttaccttaatttagatgaatgaa--ctctacaaact-cagaatctttctcc 12392  T
Q  274 cttggctcctattggctcttctccctttttctcccaaaagctcttgtttctacgtgaaaactgtttct 341  Q
    |||||||| | |||||||||||||||||||||||||| | |||||||||| |||| ||||| ||||||    
T  12393 cttggctcttcttggctcttctccctttttctcccaagaactcttgtttcaacgt-aaaacagtttct 12459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 101; Significance: 6e-50; HSPs: 3)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 69587 - 69806
Alignment:
Q  18 aatctccctcaaattctgattacaacaacattctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatgattcctacacttttccttt 117  Q
    ||||||||||||||||||||| || |||||||||||||  || ||||||||| || | ||||||||||||||||||||||||||||||||||||||||||    
T  69587 aatctccctcaaattctgattccagcaacattctaaatattgtaatcaatctgaatatgaattctaagcacattaaacatgattcctacacttttccttt 69686  T
Q  118 ctaaatcagtaatagaatcctaattcacaattcctatctcaagaacaatttatgttaaatcaattttca-gaattatatattatgatcattgagagttag 216  Q
    | ||||| |   ||||| |||||||| ||||   |||||||||||||||| |||||||||   ||||||  |||||||||||| ||||||||| ||||||    
T  69687 caaaatc-ggcctagaaccctaattcccaatctttatctcaagaacaattcatgttaaattttttttcataaattatatattaagatcattgaaagttag 69785  T
Q  217 catcacccttaccttaattta 237  Q
      |||||||||||||||||||    
T  69786 tctcacccttaccttaattta 69806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 60 - 321
Target Start/End: Original strand, 1943 - 2194
Alignment:
Q  60 aaatcaatctaaacacgaattctaagcacattaaacatgattcctacacttttcctttctaaatcagtaatagaatcctaattcacaattcctatct-ca 158  Q
    |||| ||||| || ||||||||| |||||| | |||||||| | ||| | |||| |||| ||||||||| ||||| |||||||| |||||  ||| | ||    
T  1943 aaattaatctgaatacgaattctcagcacaattaacatgatccttactcatttc-tttcgaaatcagta-tagaaccctaattcccaatttttattttca 2040  T
Q  159 agaacaatttatgttaaatcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttaccttaatttacgaatcaaagctctacaaaa 257  Q
    ||||||||| || |||| ||||||||||||| ||||||| ||  |||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||    
T  2041 agaacaattcatattaagtcaattttcagaaattatataatacaatcattgagagttagcctcagccttaccttaattttcgaatcaaagctctacaaaa 2140  T
Q  258 tccagaatctttctctcttggctcctattggctcttctccctttttctcccaaaagctcttgtt 321  Q
    |||||||||||||||||          |||||||||||||||||||||||||||||||||||||    
T  2141 tccagaatctttctctc----------ttggctcttctccctttttctcccaaaagctcttgtt 2194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 91698 - 91666
Alignment:
Q  285 ttggctcttctccctttttctcccaaaagctct 317  Q
    |||||||||||| ||||||||||||||||||||    
T  91698 ttggctcttctctctttttctcccaaaagctct 91666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 27 - 235
Target Start/End: Original strand, 6825 - 7034
Alignment:
Q  27 caaattctgattacaacaacattctaaattc-tgaaatcaatctaaacacgaattctaagcacattaaacatgattcctacacttttcctttctaaatca 125  Q
    ||||||||||||||| |||| || |||| || | ||||| || | ||||||| ||||||||| | | ||||||||||||||||| |||||||| |||||     
T  6825 caaattctgattacagcaacgttataaaatcctaaaatcgatttgaacacga-ttctaagcataattaacatgattcctacactcttcctttcaaaatcg 6923  T
Q  126 gtaatagaatcctaattcacaattcctatctcaagaacaatttatgttaaatcaattttcagaa-ttatatattatgatcattgagagttagcatcaccc 224  Q
    ||||||||| |||||||| |||||||||| |||||||||||| ||||||||||||||||||||| ||| ||||||| |||||||||||||||| ||||||    
T  6924 gtaatagaaccctaattctcaattcctatttcaagaacaattcatgttaaatcaattttcagaagttagatattataatcattgagagttagcctcaccc 7023  T
Q  225 ttaccttaatt 235  Q
    ||| |||||||    
T  7024 ttatcttaatt 7034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 15211 - 14994
Alignment:
Q  18 aatctccctcaaattctgattacaacaacattctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatgattcctacacttttccttt 117  Q
    |||||||||||||||||||| ||| ||||||| || |||  ||||||| ||| ||||||||  |||||||||||||||||||||| |||||  |||||||    
T  15211 aatctccctcaaattctgatcacagcaacattatagattaagaaatcattctgaacacgaaaactaagcacattaaacatgattcttacaccattccttt 15112  T
Q  118 ctaaatcagtaatagaatcctaattcacaattcctatctcaagaacaatttatgttaaatcaattttcagaa-ttatatattatgatcattgagagttag 216  Q
    | ||||| |    |||| |||||||| ||||   |||||||||||||||| |||||||| |||||||||||| |||||||||| ||||||||||||||||    
T  15111 caaaatc-gacccagaaccctaattcccaatctttatctcaagaacaattcatgttaaaacaattttcagaaattatatattaagatcattgagagttag 15013  T
Q  217 catcacccttaccttaatt 235  Q
      |||||||||||||||||    
T  15012 tctcacccttaccttaatt 14994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 29 - 235
Target Start/End: Original strand, 21931549 - 21931755
Alignment:
Q  29 aattctgattacaacaacattctaaattc-tgaaatcaatctaaacacgaattctaagcacattaaacatgattcctacacttttcctttctaaatcagt 127  Q
    ||||||||||||| |||| || |||| || | ||||| |||| |||||||  |||||| | | | ||||||| |||||||||||||||||| |||||  |    
T  21931549 aattctgattacagcaacgttataaaatcctaaaatcgatctgaacacga--tctaagtataattaacatgactcctacacttttcctttcaaaatcgat 21931646  T
Q  128 aatagaatcctaattcacaattcctatctcaagaacaatttatgttaaatcaattttcagaa-ttatatattatgatcattgagagttagcatcaccctt 226  Q
    ||||||| ||||||||  ||||||||| |||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||    
T  21931647 aatagaaccctaattcttaattcctatttcaagatcaattcatgttaaatcaattttcagaagttatatattataatcattgagagttagcctcaccctt 21931746  T
Q  227 accttaatt 235  Q
    |||||||||    
T  21931747 accttaatt 21931755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 93 - 361
Target Start/End: Original strand, 19750466 - 19750730
Alignment:
Q  93 aacatgattcctacacttttcctttctaaatcagtaatagaatcctaattcacaattcctatctc-aagaacaatttatgttaaatcaattttcagaatt 191  Q
    ||||||||||||| ||||||| |||| ||||| ||| ||||| |||||||| |||||  ||| || |||||||||| |||| |||| ||||||||||| |    
T  19750466 aacatgattcctatacttttc-tttcaaaatcggta-tagaaccctaattctcaatttttatttccaagaacaattcatgtaaaattaattttcagaaat 19750563  T
Q  192 -atatattatgatcattgagagttagcatcacccttaccttaatttacgaatca-aagctctacaaaatccagaatctttctctcttggctcctattggc 289  Q
     |||||||||  |||||||  |||||| ||||||||||||||||| | ||   | ||  |||||||    ||||||||||||| |||||||| | |||||    
T  19750564 catatattatagtcattgaaggttagcctcacccttaccttaattca-gatgaacaatttctacaact--cagaatctttctcccttggctcttcttggc 19750660  T
Q  290 tcttctccctttttctcccaaaagctcttgtttctacgtgaaaactgtttctctgactcttggttctatttt 361  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||  |||||||||||||||||||||    
T  19750661 tcttctccctttttctcccaaaagctcttgtttctacgtaaaaacagtt--tctgactcttggttctatttt 19750730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 18614114 - 18614332
Alignment:
Q  18 aatctccctcaaattctgattacaacaacattctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatgattcctacacttttccttt 117  Q
    ||||| |||||||||||||| ||| ||||||| |  |||  ||||||| ||| ||||||||  ||||||||| ||||||| |||| |||||  |||||||    
T  18614114 aatctacctcaaattctgatcacagcaacattatggattaagaaatcattctgaacacgaaaactaagcacaataaacataattcttacaccattccttt 18614213  T
Q  118 ctaaatcagtaatagaatcctaattcacaattcctatc-tcaagaacaatttatgttaaatcaattttcag-aattatatattatgatcattgagagtta 215  Q
    |||||||||  ||| || |||||||| |||||  |||| |||||||||||| |  ||  |||||||||||| |||||||||| ||||| |||||||| ||    
T  18614214 ctaaatcag-cataaaaccctaattctcaatt-ttatcttcaagaacaattca-attggatcaattttcagaaattatatatcatgattattgagagata 18614310  T
Q  216 gcatcacccttaccttaattta 237  Q
    |  |||||||||||||||||||    
T  18614311 gtctcacccttaccttaattta 18614332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 324 - 394
Target Start/End: Complemental strand, 18023398 - 18023327
Alignment:
Q  324 tacgtgaaaactgtttctctgactcttggtt-ctattttctaataactcagtaaaacataacctcccactta 394  Q
    |||||||||||||||||||||||| |  ||| | |||||||||||| |||||||||||||||||||||||||    
T  18023398 tacgtgaaaactgtttctctgactgtcagtttccattttctaataattcagtaaaacataacctcccactta 18023327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 391
Target Start/End: Complemental strand, 8413670 - 8413602
Alignment:
Q  324 tacgtgaaaactgtttctctgactcttggtt-ctattttctaataactcagtaaaacataacctcccac 391  Q
    ||||||||||||||||||||||||    ||| |||||||||||||| ||||||||||||||||||||||    
T  8413670 tacgtgaaaactgtttctctgactgacagtttctattttctaataattcagtaaaacataacctcccac 8413602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 361
Target Start/End: Complemental strand, 38184667 - 38184569
Alignment:
Q  262 gaatctttctctcttggctcctattggctcttctccctttttctcccaaaagctcttgttt-ctacgtgaaaactgtttctctgactcttggttctattt 360  Q
    ||||||||||| ||| |||  | |||||||||||||||||||||||||||| ||||||||| |||| | |||||  ||| |  |||||||||||||||||    
T  38184667 gaatctttctcccttagcttttcttggctcttctccctttttctcccaaaaactcttgttttctacataaaaacaattttt--gactcttggttctattt 38184570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 11775844 - 11775920
Alignment:
Q  324 tacgtgaaaactgtttctctgactcttggtt-ctattttctaataactcagtaaaacataacctcccacttatttct 399  Q
    ||||||||||||||||||||||||    ||| ||| |||||||||| ||||||||||||||||||||| | ||||||    
T  11775844 tacgtgaaaactgtttctctgactgacagtttctagtttctaataattcagtaaaacataacctcccattaatttct 11775920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 22919920 - 22919875
Alignment:
Q  285 ttggctcttctccctttttctcccaaaagctcttgtttctacgtgaaa 332  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||    
T  22919920 ttggctcttctccctttttctcccaaaag--cttgtttctacgtgaaa 22919875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 332
Target Start/End: Original strand, 19990003 - 19990049
Alignment:
Q  285 ttggctcttctccctttttctcccaaaagctcttgtttctacgtgaaa 332  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||    
T  19990003 ttggctcttctccctttttctcccaaaagctc-tgtttgtacgtgaaa 19990049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 237
Target Start/End: Complemental strand, 23482203 - 23482048
Alignment:
Q  81 ctaagcacattaaacatgattcctacacttttcctttctaaatcagtaatagaatcctaattcacaattcctatct-caagaacaatttatgttaaatca 179  Q
    |||| ||||||||||||||||| |||||  | |||||| ||||||| |  |  | |||||||| |||||  ||| | ||||||||||| |  ||| ||||    
T  23482203 ctaaacacattaaacatgattcttacaccatccctttcaaaatcagcatca--accctaattcccaatttttattttcaagaacaattcaa-ttagatca 23482107  T
Q  180 attttcagaa-ttatatattatgatcattgagagttagcatcacccttaccttaattta 237  Q
    |||||||||| ||||||| |||||| |||||||| |||  |||||||||||||||||||    
T  23482106 attttcagaaattatatactatgattattgagagatagtctcacccttaccttaattta 23482048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 394
Target Start/End: Original strand, 36601481 - 36601552
Alignment:
Q  324 tacgtgaaaactgtttctctgactcttggtt-ctattttctaataactcagtaaaacataacctcccactta 394  Q
    ||||||||||||||||||||||||    ||| | |||||||||||| |||||||||||||| ||||||||||    
T  36601481 tacgtgaaaactgtttctctgactgacagtttccattttctaataattcagtaaaacataatctcccactta 36601552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 317
Target Start/End: Original strand, 22744773 - 22744819
Alignment:
Q  271 tctcttggctcctattggctcttctccctttttctcccaaaagctct 317  Q
    |||||||||||   |||||||||||||||||||||||||||||||||    
T  22744773 tctcttggctctacttggctcttctccctttttctcccaaaagctct 22744819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 14056644 - 14056564
Alignment:
Q  152 tatctcaagaacaatttatgttaaatcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttacctta 232  Q
    |||||||||||||||| |||||||| |||||||||||| ||| ||| ||| || |||||||| |||  ||||||||||||||    
T  14056644 tatctcaagaacaattcatgttaaa-caattttcagaatttacatactattattattgagagatagtctcacccttacctta 14056564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 25111951 - 25112031
Alignment:
Q  152 tatctcaagaacaatttatgttaaatcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttacctta 232  Q
    |||||||||||||||| |||||||| |||||||||||| ||| ||| ||| || |||||||| |||  ||||||||||||||    
T  25111951 tatctcaagaacaattcatgttaaa-caattttcagaatttacatactattattattgagagatagtctcacccttacctta 25112031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 20011213 - 20011181
Alignment:
Q  285 ttggctcttctccctttttctcccaaaagctct 317  Q
    |||||||||||||||||||||||||||||||||    
T  20011213 ttggctcttctccctttttctcccaaaagctct 20011181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 21682782 - 21682750
Alignment:
Q  285 ttggctcttctccctttttctcccaaaagctct 317  Q
    |||||||||||||||||||||||||||||||||    
T  21682782 ttggctcttctccctttttctcccaaaagctct 21682750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 32950886 - 32950954
Alignment:
Q  169 atgttaaatcaattttcagaatt---atatattatgatcattgagagttagcatcacccttaccttaatt 235  Q
    ||||||||||||||| |||||||   ||| | |||||| ||||||||||||| |||||||||||||||||    
T  32950886 atgttaaatcaattt-cagaatttacatacactatgattattgagagttagcctcacccttaccttaatt 32950954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 317
Target Start/End: Complemental strand, 20004817 - 20004771
Alignment:
Q  271 tctcttggctcctattggctcttctccctttttctcccaaaagctct 317  Q
    |||||||||||   |||||||||||||||||||||||||||| ||||    
T  20004817 tctcttggctctacttggctcttctccctttttctcccaaaaactct 20004771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 257
Target Start/End: Complemental strand, 15635125 - 15635070
Alignment:
Q  202 atcattgagagttagcatcacccttacctt-aatttacgaatcaaagctctacaaaa 257  Q
    ||||||||||||||| |||||||||||||| |||| | ||| |||||||||||||||    
T  15635125 atcattgagagttagtatcacccttaccttgaattgatgaa-caaagctctacaaaa 15635070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 44477621 - 44477677
Alignment:
Q  177 tcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttacctta 232  Q
    ||||||||||||| ||||| |||||||| |||||||| |||  ||||||||||||||    
T  44477621 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 44477677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 44492779 - 44492835
Alignment:
Q  177 tcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttacctta 232  Q
    ||||||||||||| ||||| |||||||| |||||||| |||  ||||||||||||||    
T  44492779 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 44492835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 78 - 235
Target Start/End: Original strand, 121802 - 121961
Alignment:
Q  78 attctaagcacattaaacatgattcctacactttt-cctttctaaatcagtaatagaatcctaattcacaattcctatctcaagaacaatttatgttaaa 176  Q
    |||||||||| | | |||||||||||||||||||| || ||| ||| ||||||||||| |||||||| |||||||||| |||||||||||| |||||||     
T  121802 attctaagcataattaacatgattcctacactttttcccttcaaaaacagtaatagaaccctaattctcaattcctatttcaagaacaattcatgttaac 121901  T
Q  177 tcaattttcaga-attatatattatgatcattgagagttagcatcacccttaccttaatt 235  Q
    ||||||||||||  ||||||||||| |||||||||||||||| |||||||||||||||||    
T  121902 tcaattttcagattttatatattataatcattgagagttagcctcacccttaccttaatt 121961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 78 - 235
Target Start/End: Original strand, 132679 - 132837
Alignment:
Q  78 attctaagcacattaaacatgattcctacactttt-cctttctaaatcagtaatagaatcctaattcacaattcctatctcaagaacaatttatgttaaa 176  Q
    |||||||||| | | |||||||||||||||||||| || ||| ||| ||||||||||| |||||||| |||||||||| |||||||||||| |||||||     
T  132679 attctaagcataattaacatgattcctacactttttcccttcaaaa-cagtaatagaaccctaattctcaattcctatttcaagaacaattcatgttaac 132777  T
Q  177 tcaattttcaga-attatatattatgatcattgagagttagcatcacccttaccttaatt 235  Q
    ||||||||||||  ||||||||||| |||||||||||||||| |||||||||||||||||    
T  132778 tcaattttcagattttatatattataatcattgagagttagcctcacccttaccttaatt 132837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 29 - 254
Target Start/End: Complemental strand, 2831 - 2607
Alignment:
Q  29 aattctgattacaacaacattctaaattc-tgaaatcaatctaaacacgaattctaagcacattaaacatgattcctacacttttcctttctaaatcagt 127  Q
    |||||||||||||||||| || |||| || | ||||| |||| |||||||  |||| ||| | | ||||||| ||||||||||||| |||| ||||| ||    
T  2831 aattctgattacaacaacgttataaaatcctaaaatcgatctgaacacga--tctaggcataattaacatgactcctacacttttcatttcaaaatcggt 2734  T
Q  128 aatagaatcctaattcacaattcctatct-caagaacaatttatgttaaatcaattttcagaa-ttatatattatgatcattgagagttagcatcaccct 225  Q
    | ||||| |||||||| |||||| ||| | ||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||    
T  2733 a-tagaaccctaattctcaattcttattttcaagaacaattcatgttaaatcaattttcagaagttatatattataatcattgagagttagcctcaccct 2635  T
Q  226 taccttaatttacgaatcaaagctctaca 254  Q
    |||||||||| | |||| |||||||||||    
T  2634 taccttaattgaagaat-aaagctctaca 2607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 299 - 396
Target Start/End: Complemental strand, 7589 - 7493
Alignment:
Q  299 tttttctcccaaaagctcttgtttctacgtgaaaactgtttct--ctgactcttggttctattttctaataactcagtaaaacataacctcccacttatt 396  Q
    ||||||||||||||   |||| || ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7589 tttttctcccaaaa---cttgattgtacgtgaaaactgtttctttctgactcttggttctattttctaataactcagtaaaacataacctcccacctatt 7493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 29 - 235
Target Start/End: Original strand, 11157944 - 11158151
Alignment:
Q  29 aattctgattacaacaacattctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatgattcctacacttttcctttctaaatcagta 128  Q
    |||||||||| || ||||||||||||   || ||||||||| || | ||||||||||||||||||||||||||||||||||||||||||| ||||| |      
T  11157944 aattctgattccagcaacattctaaacattgtaatcaatctgaatatgaattctaagcacattaaacatgattcctacacttttcctttcaaaatc-ggc 11158042  T
Q  129 atagaatcctaattcacaattcctatctcaagaacaatttatgtt-aaatcaattttcag-aattatatattatgatcattgagagttagcatcaccctt 226  Q
     ||||| | |||||| ||||    ||||||||||||||| ||||| ||| |||||||||| |||||||||||| ||||||||||||||||  ||||||||    
T  11158043 ctagaaccataattcccaatcttcatctcaagaacaattcatgttaaaaacaattttcagaaattatatattaagatcattgagagttagtctcaccctt 11158142  T
Q  227 accttaatt 235  Q
    |||||||||    
T  11158143 accttaatt 11158151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 151 - 268
Target Start/End: Original strand, 20805294 - 20805410
Alignment:
Q  151 ctatctcaagaacaatttatgttaaatcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttaccttaatttacgaatcaaagct 249  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| | | |||||| ||    
T  20805294 ctatctcaagaacaatttatgttaaatcaattttcagaaattatatattatgatcattgagagttagcctcacccttaccttaattgaag-atcaaa-ct 20805391  T
Q  250 ctacaaaatccagaatctt 268  Q
    ||||||||| | |||||||    
T  20805392 ctacaaaattccgaatctt 20805410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 18712641 - 18712857
Alignment:
Q  18 aatctccctcaaattctgattacaacaacattctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatgattcctacacttttccttt 117  Q
    |||||||||||||||||||| ||| ||||||| || |||  ||||||| ||| ||||||||  |||| ||||||||||||||||| |||||  |||||||    
T  18712641 aatctccctcaaattctgatcacagcaacattatagattaagaaatcattctgaacacgaaaactaaacacattaaacatgattcttacaccattccttt 18712740  T
Q  118 ctaaatcagtaatagaatcctaattcacaattcct-atctcaagaacaatttatgttaaatcaattttcag-aattatatattatgatcattgagagtta 215  Q
    | ||||||| |    || ||||||||  ||||  | || |||||||||||| |  ||| |||||||||||| ||||||||| |||||| |||||||| ||    
T  18712741 caaaatcagca--tcaaccctaattctaaatttttaatttcaagaacaattca-attagatcaattttcagaaattatatactatgattattgagagata 18712837  T
Q  216 gcatcacccttaccttaatt 235  Q
    |  |||||| ||||||||||    
T  18712838 gtctcacccataccttaatt 18712857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 205 - 331
Target Start/End: Original strand, 24960887 - 24961012
Alignment:
Q  205 attgagagttagcatcacccttaccttaattta--cgaatcaaagctctacaaaatccagaatctttctctcttggctcctattggctcttctccctttt 302  Q
    ||||||||| | | ||||||||||||||||| |  |||| |||| ||||||||||| ||||||||| |||||||||||  | ||| ||||||||||||||    
T  24960887 attgagagtaaacctcacccttaccttaattcagacgaa-caaa-ctctacaaaattcagaatcttcctctcttggctgttcttgactcttctccctttt 24960984  T
Q  303 tctcccaaaagctcttgtttctacgtgaa 331  Q
    ||| |||||||||| ||||| ||||||||    
T  24960985 tcttccaaaagctc-tgtttgtacgtgaa 24961012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 86 - 232
Target Start/End: Complemental strand, 19663663 - 19663517
Alignment:
Q  86 cacattaaacatgattcctacacttttcctttctaaatcagtaatagaatcctaattcacaattcctat-ctcaagaacaatttatgttaaatcaatttt 184  Q
    |||||||||||| |||| |||||  |||||||| ||||||| |  |  | |||||||| |||||  ||| ||||||||||||| |||||||| |||||||    
T  19663663 cacattaaacataattcttacaccattcctttcaaaatcagcatca--accctaattcccaatttttattctcaagaacaattcatgttaaaacaatttt 19663566  T
Q  185 cag-aattatatattatgatcattgagagttagcatcacccttacctta 232  Q
    ||| ||||||||| |||||| || ||||| |||  ||||||||||||||    
T  19663565 cagaaattatatactatgattatcgagagatagtctcacccttacctta 19663517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 237
Target Start/End: Original strand, 32651425 - 32651632
Alignment:
Q  28 aaattctgattacaacaacattctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatgattcctacacttttcctttctaaatcagt 127  Q
    |||||||||| ||| ||||||| || |||  ||||||| ||||||||| ||  |||| ||||||||||||||||| |||||  | |||||| |||||||     
T  32651425 aaattctgatcacagcaacattatagattaagaaatcattctaaacactaaaactaaacacattaaacatgattcttacaccatccctttc-aaatcagc 32651523  T
Q  128 aatagaatcctaattcacaattcctatct-caagaacaatttatgttaaatcaattttcagaa-ttatatattatgatcattgagagttagcatcaccct 225  Q
    |  |  | |||||||| |||||  ||| | ||||||||| | |  ||| |||||||||||||| ||||||| |||||| |||||||| |||  |||||||    
T  32651524 atca--accctaattcccaatttttattttcaagaacaactcaa-ttagatcaattttcagaaattatatactatgattattgagagatagtctcaccct 32651620  T
Q  226 taccttaattta 237  Q
    ||||||||||||    
T  32651621 taccttaattta 32651632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 394
Target Start/End: Complemental strand, 634925 - 634855
Alignment:
Q  324 tacgtgaaaactgtttctctgactcttggtt-ctattttctaataactcagtaaaacataacctcccactta 394  Q
    |||||||||||||||||||| |||  | ||| |||||||||||||| |||||||||||||||||||||||||    
T  634925 tacgtgaaaactgtttctct-actgatagtttctattttctaataattcagtaaaacataacctcccactta 634855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 16372801 - 16373014
Alignment:
Q  27 caaattctgattacaacaacattctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatgattcct-acacttttcctttctaaatca 125  Q
    ||||||| ||||||| ||||||| ||| | || |||||||||| || | |||||||||||| | | ||||||| |||| || |||||| || | ||||||    
T  16372801 caaattcggattacagcaacattataattcctaaaatcaatctgaatatgaattctaagcataattaacatgaatccttactcttttc-ttccaaaatca 16372899  T
Q  126 gtaatagaatcctaattcacaa-ttcctatct--caagaacaatttatgttaaatcaattttcagaatt-atatattatgatcattgagagttagcatca 221  Q
    ||| ||||| |||||||| ||| ||| ||| |  |||||||||||    | ||| ||||||||||||   ||||||||| ||||||||  |||||| |||    
T  16372900 gta-tagaaccctaattcccaaattcttatttttcaagaacaattctaatcaaaacaattttcagaaaccatatattataatcattgaaggttagcctca 16372998  T
Q  222 cccttaccttaattta 237  Q
    ||||||||||||||||    
T  16372999 cccttaccttaattta 16373014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 347
Target Start/End: Original strand, 52984325 - 52984384
Alignment:
Q  285 ttggctcttctccctttttctcccaaaagctcttgtttctacgtgaaaactgtttctctgact 347  Q
    |||||||||||||||||||||||||||||  ||||||| |||||| ||||||||| |||||||    
T  52984325 ttggctcttctccctttttctcccaaaag--cttgtttttacgtg-aaactgtttttctgact 52984384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 317
Target Start/End: Complemental strand, 25091380 - 25091334
Alignment:
Q  271 tctcttggctcctattggctcttctccctttttctcccaaaagctct 317  Q
    ||||||||||| | ||||||||||||| |||||||||||||||||||    
T  25091380 tctcttggctcttcttggctcttctccatttttctcccaaaagctct 25091334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 20437080 - 20437019
Alignment:
Q  177 tcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttaccttaattta 237  Q
    ||||||||||||| ||||| |||||||| |||||||| |||  |||||||||||||||||||    
T  20437080 tcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttaattta 20437019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 317
Target Start/End: Original strand, 41315305 - 41315337
Alignment:
Q  285 ttggctcttctccctttttctcccaaaagctct 317  Q
    |||||||||||||||||||||||||||||||||    
T  41315305 ttggctcttctccctttttctcccaaaagctct 41315337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 347
Target Start/End: Original strand, 35064640 - 35064699
Alignment:
Q  285 ttggctcttctccctttttctcccaaaagctcttgtttctacgtgaaaactgtttctctgact 347  Q
    |||||||||||||||||||||||||||||   |||||| |||||| ||||||||| |||||||    
T  35064640 ttggctcttctccctttttctcccaaaag--tttgtttttacgtg-aaactgtttttctgact 35064699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 259
Target Start/End: Original strand, 21660387 - 21660448
Alignment:
Q  198 tatgatcattgagagttagcatcacccttacctt-aatttacgaatcaaagctctacaaaatc 259  Q
    |||||| ||||||||||||| ||||||||||||| |||| | ||| |||||||||||||||||    
T  21660387 tatgattattgagagttagcctcacccttaccttgaattgatgaa-caaagctctacaaaatc 21660448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 235
Target Start/End: Original strand, 18824633 - 18824670
Alignment:
Q  198 tatgatcattgagagttagcatcacccttaccttaatt 235  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  18824633 tatgattattgagagttagcctcacccttaccttaatt 18824670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 52984209 - 52984279
Alignment:
Q  169 atgttaaatcaattttcagaatt---atatattatgatcattgagagttagcatcacccttaccttaattta 237  Q
    ||||||||||||||| |||||||   ||| | |||||| ||||||||||||| ||||| |||||||||||||    
T  52984209 atgttaaatcaattt-cagaatttgcatacactatgattattgagagttagcctcaccattaccttaattta 52984279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 332
Target Start/End: Original strand, 20058587 - 20058632
Alignment:
Q  285 ttggctcttctccctttttctcccaaaagctcttgtttctacgtgaaa 332  Q
    |||||||||||||||||||||| ||||||  ||||||| |||||||||    
T  20058587 ttggctcttctccctttttctcacaaaag--cttgtttttacgtgaaa 20058632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 28203784 - 28203729
Alignment:
Q  204 cattgagagttagcatcacccttacctt-aatttacgaatcaaagctctacaaaatc 259  Q
    |||||||||||||| ||||||||||||| |||| | ||| |||||||||||||||||    
T  28203784 cattgagagttagcctcacccttaccttgaattgatgaa-caaagctctacaaaatc 28203729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 299 - 395
Target Start/End: Original strand, 5134 - 5229
Alignment:
Q  299 tttttctcccaaaagctcttgtttctacgtgaaaactgtttctctgactcttggttctattttctaataactcagtaaaacataacctcccacttat 395  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5134 tttttctcccaaaa-ctcttgtttctacgtgaaaactgtttctctaactcttggttatattttctaataactcagtaaaacataacctcccacttat 5229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0600 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: scaffold0600
Description:

Target: scaffold0600; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 29 - 235
Target Start/End: Original strand, 585 - 791
Alignment:
Q  29 aattctgattacaacaacattctaaattc-tgaaatcaatctaaacacgaattctaagcacattaaacatgattcctacacttttcctttctaaatcagt 127  Q
    |||| ||||||||||||| || |||| || | ||||| |||| |||||||  |||| ||| | | ||||||| ||||||||||||| |||| ||||| ||    
T  585 aattatgattacaacaacgttataaaatcctaaaatcgatctgaacacga--tctaggcataattaacatgactcctacacttttcatttcaaaatctgt 682  T
Q  128 aatagaatcctaattcacaattcctatct-caagaacaatttatgttaaatcaattttcagaa-ttatatattatgatcattgagagttagcatcaccct 225  Q
    | ||||||||||| || |||||||||| | ||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||     
T  683 a-tagaatcctaactctcaattcctattttcaagaacaattcatgttaaatcaattttcagaagttatatattataatcattgagagttagcctcacccc 781  T
Q  226 taccttaatt 235  Q
    ||||||||||    
T  782 taccttaatt 791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 29 - 235
Target Start/End: Original strand, 16800878 - 16801086
Alignment:
Q  29 aattctgattacaacaacatt-ctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatgattcctacacttttcctttctaaatcagt 127  Q
    |||||||||||||||||  || |||||| |||||| | |||| |||| || ||||||||| | | ||||||  |||||||||||||   || ||||||||    
T  16800878 aattctgattacaacaatgttactaaatcctgaaaacgatctgaacatga-ttctaagcataattaacatgtctcctacacttttcaactcaaaatcagt 16800976  T
Q  128 aatagaatcctaattcac-aattcctatctcaagaacaatttatgttaaatcaattttcagaa-ttatatattatgatcattgagagttagcatcaccct 225  Q
    | ||||| |||||||| | ||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||  |||||||||||||||  |||||||    
T  16800977 attagaaccctaattccccaattcctatttcaagaacaattcatgttaaatcaattttcagaagttatatattacaatcattgagagttagtctcaccct 16801076  T
Q  226 taccttaatt 235  Q
    ||||| ||||    
T  16801077 tacctgaatt 16801086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 324 - 394
Target Start/End: Complemental strand, 16324462 - 16324391
Alignment:
Q  324 tacgtgaaaactgtttctctgactcttggtt-ctattttctaataactcagtaaaacataacctcccactta 394  Q
    ||||||||||||||||||||||||    ||| |||||||||||||| |||||||||||||||||||||||||    
T  16324462 tacgtgaaaactgtttctctgactgacagtttctattttctaataattcagtaaaacataacctcccactta 16324391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 18929086 - 18929303
Alignment:
Q  18 aatctccctcaaattctgattacaacaacattctaaattctgaaatcaatctaaacacgaatt-ctaagcacattaaacatgattcctacacttttcctt 116  Q
    ||||| |||||| ||||||| ||| ||||||| || |||  ||||||| |||||||| |||   |||| ||||||||||||||||| |||||  ||||||    
T  18929086 aatctacctcaatttctgatcacagcaacattatagattaagaaatcattctaaacatgaaaaactaaacacattaaacatgattcttacaccattcctt 18929185  T
Q  117 tctaaa-tcagtaatagaatcctaattcacaattcctatctc-aagaacaatttatgttaaatcaattttcagaa-ttatatattatgatcattgagagt 213  Q
    || ||| |||| |   ||| |||||| | |||||  |||||| ||||||||| ||  ||| |||||||||||||| |||||||| ||||| ||||||||     
T  18929186 tcaaaaatcagcat--gaaccctaatccccaattt-tatctcgaagaacaatatac-ttagatcaattttcagaaattatatatcatgattattgagaga 18929281  T
Q  214 tagcatcacccttaccttaatt 235  Q
    |||  |||||||||||||||||    
T  18929282 tagtctcacccttaccttaatt 18929303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 394
Target Start/End: Original strand, 42691 - 42728
Alignment:
Q  357 attttctaataactcagtaaaacataacctcccactta 394  Q
    |||||||||||| |||||||||||||||||||||||||    
T  42691 attttctaataattcagtaaaacataacctcccactta 42728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 259
Target Start/End: Complemental strand, 52212498 - 52212405
Alignment:
Q  168 tatgttaaatcaattttcagaatt---atatattatgatcattgagagttagcatcacccttacctta-atttacgaatcaaagctctacaaaatc 259  Q
    |||||||||||||||| |||||||   ||| | |||||| ||||||||||||| |||||||||||||| ||| | ||| |||||||||||||||||    
T  52212498 tatgttaaatcaattt-cagaatttacatacactatgattattgagagttagcctcacccttaccttagattgatgaa-caaagctctacaaaatc 52212405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 332
Target Start/End: Original strand, 43929494 - 43929539
Alignment:
Q  285 ttggctcttctccctttttctcccaaaagctcttgtttctacgtgaaa 332  Q
    |||||||||||||||||||||||||||||  ||||||| |||||||||    
T  43929494 ttggctcttctccctttttctcccaaaag--cttgtttttacgtgaaa 43929539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 9534326 - 9534385
Alignment:
Q  177 tcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttaccttaatt 235  Q
    ||||||||||||| ||||| |||||||| |||||||| |||  |||||||||||||||||    
T  9534326 tcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttaatt 9534385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 52338021 - 52337953
Alignment:
Q  169 atgttaaatcaattttcagaatt---atatattatgatcattgagagttagcatcacccttaccttaatt 235  Q
    ||||||||||||||| |||||||   ||| | |||||| ||||||||||||| |||||||||||||||||    
T  52338021 atgttaaatcaattt-cagaattcacatacactatgattattgagagttagcctcacccttaccttaatt 52337953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 394
Target Start/End: Original strand, 3803991 - 3804029
Alignment:
Q  356 tattttctaataactcagtaaaacataacctcccactta 394  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  3803991 tattttttaataattcagtaaaacataacctcccactta 3804029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 232
Target Start/End: Original strand, 12276814 - 12276848
Alignment:
Q  198 tatgatcattgagagttagcatcacccttacctta 232  Q
    |||||| ||||||||||||||||||||||||||||    
T  12276814 tatgattattgagagttagcatcacccttacctta 12276848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 14762814 - 14762753
Alignment:
Q  177 tcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttaccttaattta 237  Q
    ||||||||||||| ||||| |||||||| || ||||| |||  |||||||||||||||||||    
T  14762814 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttaattta 14762753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 17197685 - 17197629
Alignment:
Q  288 gctcttctc-cctttttctcccaaaagctcttgtttctacgtgaaaactgtttctctg 344  Q
    ||||||||| || |||||||||||||| |||||||||||||| ||||| |||||||||    
T  17197685 gctcttctctcccttttctcccaaaag-tcttgtttctacgtaaaaacagtttctctg 17197629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 17198151 - 17198095
Alignment:
Q  288 gctcttctc-cctttttctcccaaaagctcttgtttctacgtgaaaactgtttctctg 344  Q
    ||||||||| || |||||||||||||| |||||||||||||| ||||| |||||||||    
T  17198151 gctcttctctcccttttctcccaaaag-tcttgtttctacgtaaaaacagtttctctg 17198095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 17240570 - 17240510
Alignment:
Q  176 atcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttaccttaatt 235  Q
    |||||||||||||| |||| ||||| ||| |||||||| |||  |||||||||||||||||    
T  17240570 atcaattttcagaaattatgtattaagattattgagagatagtctcacccttaccttaatt 17240510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 18366580 - 18366515
Alignment:
Q  169 atgttaaatcaattttcagaatt---atatattatgatcattgagagttagcatcacccttacctta 232  Q
    ||||||||||||||| |||||||   ||| | |||||| ||||||||||||| ||||||||||||||    
T  18366580 atgttaaatcaattt-cagaatttacatacactatgattattgagagttagcctcacccttacctta 18366515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 78 - 268
Target Start/End: Original strand, 24661477 - 24661666
Alignment:
Q  78 attctaagcacattaaacatgattcctacacttttcctttctaaatcagtaatagaatcctaattcac-aattcctatctcaagaacaatttatgttaaa 176  Q
    |||||||||| | | ||||||  |||||||| ||||   || ||||||||| ||||| |||||||| | ||||||||| ||||||||| || ||||||||    
T  24661477 attctaagcataattaacatgtctcctacacctttcaactcaaaatcagtattagaaccctaattccccaattcctatttcaagaaca-ttcatgttaaa 24661575  T
Q  177 tcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttaccttaatttacgaatcaaagctctacaaaatccagaatctt 268  Q
    ||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||| | | |||||| ||||||||||| |||||||||    
T  24661576 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttaccttaattgaag-atcaaa-ctctacaaaattcagaatctt 24661666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 23264984 - 23265200
Alignment:
Q  18 aatctccctcaaattctgattacaacaacattctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatgattcctacacttttccttt 117  Q
    |||||||||||||||||||| ||||||||||| || |||  ||||||| ||| ||| ||||  |||| ||||||||||||||||| |||||  |||||||    
T  23264984 aatctccctcaaattctgatcacaacaacattatagattaagaaatcattctgaacgcgaaaactaaacacattaaacatgattcttacaccattccttt 23265083  T
Q  118 ctaaatcagtaatagaatcctaattcacaattccta-tctcaagaacaatttatgttaaatcaattttcag-aattatatattatgatcattgagagtta 215  Q
    | ||||||| |    || |||||||| |||||  || | |||||||||||| |  ||| |||||||||||| ||||||||| |||||| |||||||| ||    
T  23265084 caaaatcagca--tcaaccctaattctcaatttttattttcaagaacaattca-attagatcaattttcagaaattatatactatgattattgagagata 23265180  T
Q  216 gcatcacccttaccttaatt 235  Q
    |  |||||||||||||||||    
T  23265181 gtctcacccttaccttaatt 23265200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 327 - 394
Target Start/End: Complemental strand, 20950795 - 20950727
Alignment:
Q  327 gtgaaaactgtttctctgactcttggtt-ctattttctaataactcagtaaaacataacctcccactta 394  Q
    |||||||||||||||||||||    ||| |||||||||||||| |||||||||||||||||||||||||    
T  20950795 gtgaaaactgtttctctgactgacagtttctattttctaataattcagtaaaacataacctcccactta 20950727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 26904387 - 26904477
Alignment:
Q  169 atgttaaatcaattttcagaatt---atatattatgatcattgagagttagcatcacccttacctt-aatttacgaatcaaagctctacaaaa 257  Q
    ||||||||||||||| |||||||   ||| | |||||| ||||||||||||||||||||||||||| |||||| ||| |||||||||||||||    
T  26904387 atgttaaatcaattt-cagaatttacatacactatgattattgagagttagcatcacccttaccttgaatttatgaa-caaagctctacaaaa 26904477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 235
Target Start/End: Original strand, 23280115 - 23280268
Alignment:
Q  81 ctaagcacattaaacatgattcctacacttttcctttctaaatcagtaatagaatcctaattcacaattcctatct-caagaacaatttatgttaaatca 179  Q
    |||| ||||||||||||||||| |||||  |||||||| ||||||| |  |  | |||||||| |||||  ||| | ||||||||||| |  ||| ||||    
T  23280115 ctaaacacattaaacatgattcttacaccattcctttcaaaatcagcatca--accctaattctcaatttttattttcaagaacaattcaa-ttagatca 23280211  T
Q  180 attttcagaa-ttatatattatgatcattgagagttagcatcacccttaccttaatt 235  Q
    |||||||||| ||||||| |||||| |||||||| |||  |||||||||||||||||    
T  23280212 attttcagaaattatatactatgattattgagagatagtctcacccttaccttaatt 23280268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 21908201 - 21908285
Alignment:
Q  18 aatctccctcaaattctgattacaacaacattctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatgattc 102  Q
    ||||| |||||| ||||||| ||||||||||| || |||  ||||||| ||| ||||||||  |||| |||||||||||||||||    
T  21908201 aatctacctcaatttctgatcacaacaacattatagattaagaaatcattctgaacacgaaaactaaacacattaaacatgattc 21908285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 6483716 - 6483777
Alignment:
Q  177 tcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttaccttaattta 237  Q
    ||||||||||||| ||||| |||||||| |||||||| |||  |||||||||||||||||||    
T  6483716 tcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttaattta 6483777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 6487183 - 6487244
Alignment:
Q  177 tcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttaccttaattta 237  Q
    ||||||||||||| ||||| |||||||| |||||||| |||  |||||||||||||||||||    
T  6487183 tcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttaattta 6487244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 21908353 - 21908417
Alignment:
Q  172 ttaaatcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttaccttaatt 235  Q
    ||| |||||||||||||| |||||||| ||||| |||||||| |||  |||||||||||||||||    
T  21908353 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttaccttaatt 21908417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 237
Target Start/End: Original strand, 9242817 - 9243021
Alignment:
Q  35 gattacaacaacattctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatgattcct-acacttttcctttctaaatcagtaataga 133  Q
    ||||||| ||||||| ||| | || ||||| |||| || | |||||||||||| | | ||||||| |||| || |||||| || | |||| |||| ||||    
T  9242817 gattacagcaacattataattcctaaaatcgatctgaatatgaattctaagcataattaacatgaatccttactcttttc-ttccaaaattagta-taga 9242914  T
Q  134 atcctaattcacaattcctatct--caagaacaatttatgttaaatcaattttcagaatt-atatattatgatcattgagagttagcatcacccttacct 230  Q
    | |||||||| |||||| ||| |  |||||||||||    | ||| ||||||||||||   ||||||||| ||||||||  |||||| ||||||||||||    
T  9242915 accctaattcccaattcttatttttcaagaacaattctaatcaaaacaattttcagaaaccatatattataatcattgaaggttagcctcacccttacct 9243014  T
Q  231 taattta 237  Q
    |||||||    
T  9243015 taattta 9243021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 21245667 - 21245757
Alignment:
Q  169 atgttaaatcaattttcagaatt---atatattatgatcattgagagttagcatcacccttacctt-aatttacgaatcaaagctctacaaaa 257  Q
    ||||||||||||||| |||||||   ||| | |||||| ||||||||||||| ||||||||||||| |||| | ||| |||||||||||||||    
T  21245667 atgttaaatcaattt-cagaatttacatacactatgattattgagagttagcctcacccttaccttgaattgatgaa-caaagctctacaaaa 21245757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 23086403 - 23086452
Alignment:
Q  184 tcagaattatatat-tatgatcattgagagttagcatcacccttacctta 232  Q
    ||||||||||| || ||| |||||||||||||||| ||||||||||||||    
T  23086403 tcagaattatacatctataatcattgagagttagcctcacccttacctta 23086452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 257
Target Start/End: Complemental strand, 10039091 - 10039036
Alignment:
Q  202 atcattgagagttagcatcacccttacctt-aatttacgaatcaaagctctacaaaa 257  Q
    |||||||||||||||| ||||||||||||| |||| | ||| |||||||||||||||    
T  10039091 atcattgagagttagcctcacccttaccttgaattgatgaa-caaagctctacaaaa 10039036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 300 - 396
Target Start/End: Complemental strand, 1204 - 1108
Alignment:
Q  300 ttttctcccaaaagctcttgtttctacgtgaaaa-ctgtttctctgactcttggttctattttctaataactcagtaaaacataacctcccacttatt 396  Q
    ||||||||||||| ||||||||||||| |||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1204 ttttctcccaaaa-ctcttgtttctacctgaaaaactttttctctaactcttggttctattttctaataactcagtaaaacataacctcccacttatt 1108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 300 - 396
Target Start/End: Complemental strand, 21730736 - 21730641
Alignment:
Q  300 ttttctcccaaaagctcttgtttctacgtgaaaa-ctgtttctctgactcttggttctattttctaataactcagtaaaacataacctcccacttatt 396  Q
    ||||||||||||| ||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  21730736 ttttctcccaaaa-ctctt-tttctacgtgaaaaactgtttctctgactcttgtttctattttctaataactcagtaaaacataacctcccacttatt 21730641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 26 - 232
Target Start/End: Complemental strand, 21231165 - 21230960
Alignment:
Q  26 tcaaattctgattacaacaacattctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatgattcctacacttttcctttctaaatca 125  Q
    |||||||||||| ||||||||||| || |||  ||||||| ||| ||||| || |   | ||||||||||||||||| |||||  ||||||||  |||||    
T  21231165 tcaaattctgatcacaacaacattatagattaagaaatcattctgaacaccaaattacaacacattaaacatgattcttacaccattcctttcagaatca 21231066  T
Q  126 gtaatagaatcctaattcacaattcctatctcaagaacaatttatgttaaatcaattttcag-aattatatattatgatcattgagagttagcatcaccc 224  Q
    | |  |  | |||||||| |||||  |||||||||||||||| |||||||| |||||||||| ||||||||| |||||| |||||||| |||  ||||||    
T  21231065 gcatca--accctaattcccaatttttatctcaagaacaattcatgttaaaacaattttcagaaattatatactatgattattgagagatagtctcaccc 21230968  T
Q  225 ttacctta 232  Q
    ||||||||    
T  21230967 ttacctta 21230960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 78 - 235
Target Start/End: Original strand, 46625861 - 46626020
Alignment:
Q  78 attctaagcacattaaacatgattcctacacttttcctttctaaatcagtaatagaatcctaattcac-aattcctatctcaagaacaatttatgttaaa 176  Q
    |||||||||| | | ||||||  |||||||||||||   || ||||||||| ||||| |||||| | | |||||||||  ||||||||||| ||||||||    
T  46625861 attctaagcataattaacatgtctcctacacttttcaactcaaaatcagtattagaaccctaatcccccaattcctattccaagaacaattcatgttaaa 46625960  T
Q  177 tcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttaccttaatt 235  Q
    ||||||||| ||| ||||||||||| |||||||||||||||  ||||||||| |||||||    
T  46625961 tcaattttccgaaattatatattataatcattgagagttagtctcacccttatcttaatt 46626020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 300 - 396
Target Start/End: Complemental strand, 13864305 - 13864208
Alignment:
Q  300 ttttctcccaaaagctcttgtttctacgtgaaaa---ctgtttctctgactcttggttctattttctaataactcagtaaaacataacctcccacttatt 396  Q
    ||||||||||||| |||||||||||| || ||||   ||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  13864305 ttttctcccaaaa-ctcttgtttctatgtaaaaaaaactgtt-ctctgactcttggttctattttctagtaactgagtaaaacataacctcccacttatt 13864208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 11382967 - 11382868
Alignment:
Q  136 cctaattcacaattcctatctcaagaacaatttatgttaaatcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttaccttaat 234  Q
    |||||||| ||||| | ||| ||||||||||| || ||||  |||||||||||| |||||||||||||| |||||||| |||  ||||||||||||||||    
T  11382967 cctaattcccaatttc-atcccaagaacaattcatattaagacaattttcagaaattatatattatgattattgagagatagtctcacccttaccttaat 11382869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 13679336 - 13679548
Alignment:
Q  18 aatctccctcaaattctgattacaacaacattctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatgattcctacacttttccttt 117  Q
    |||||||||||| ||||||| |||  |||||| || |||  ||||||| ||| ||||||||  ||||||||| ||||||| |||| |||||  |||||||    
T  13679336 aatctccctcaa-ttctgatcacagtaacattatagattaagaaatcattctgaacacgaacactaagcacaataaacataattcttacaccattccttt 13679434  T
Q  118 ctaaatcagtaatagaatcctaattcacaattcctatc-tcaagaacaatttatgttaaatcaattttcagaa-ttatatattatgatcattgagagtta 215  Q
    | ||||||| |  | || |||||||| || ||  |||| ||||||||||||||  ||| ||||||||||| || |||||||| ||||||||||| || ||    
T  13679435 caaaatcagcatca-aaccctaattctcagttt-tatcatcaagaacaatttaa-ttagatcaattttcaaaaattatatatcatgatcattgaaagata 13679531  T
Q  216 gcatcacccttacctta 232  Q
    |  ||||||||||||||    
T  13679532 gtctcacccttacctta 13679548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 13664773 - 13664863
Alignment:
Q  18 aatctccctcaaattctgattacaacaacattctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatgattcctacac 108  Q
    |||||||||||||||||||| ||| ||||||| || |||  ||||||| ||| ||||||||  ||||||||| ||||||| |||| |||||    
T  13664773 aatctccctcaaattctgatcacagcaacattatagattaagaaatcattctgaacacgaacactaagcacaataaacataattcttacac 13664863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 11389444 - 11389345
Alignment:
Q  136 cctaattcacaattcctatctcaagaacaatttatgttaaatcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttaccttaat 234  Q
    |||||||| ||||| | ||| |||||||||||  | ||||  |||||||||||| |||||||||||||| |||||||| |||  ||||||||||||||||    
T  11389444 cctaattcccaatttc-atcccaagaacaattcgtattaagacaattttcagaaattatatattatgattattgagagatagtctcacccttaccttaat 11389346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 317
Target Start/End: Original strand, 45186521 - 45186553
Alignment:
Q  285 ttggctcttctccctttttctcccaaaagctct 317  Q
    |||||||||||||||||||||||||||||||||    
T  45186521 ttggctcttctccctttttctcccaaaagctct 45186553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 16009575 - 16009634
Alignment:
Q  177 tcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttaccttaatt 235  Q
    ||||||||||||| ||||| |||||||| |||||||| |||  |||||||||||||||||    
T  16009575 tcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttaatt 16009634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 40554583 - 40554515
Alignment:
Q  169 atgttaaatcaattttcagaatt---atatattatgatcattgagagttagcatcacccttaccttaatt 235  Q
    ||||||||||||||| |||||||   ||| | |||||| ||||||||||||| |||||||||||||||||    
T  40554583 atgttaaatcaattt-cagaattttcatacactatgattattgagagttagcctcacccttaccttaatt 40554515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 315
Target Start/End: Complemental strand, 39431132 - 39431102
Alignment:
Q  285 ttggctcttctccctttttctcccaaaagct 315  Q
    |||||||||||||||||||||||||||||||    
T  39431132 ttggctcttctccctttttctcccaaaagct 39431102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 14422983 - 14423044
Alignment:
Q  177 tcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttaccttaattta 237  Q
    ||||||||||||| ||||| |||||||| |||||||| |||  |||||||||||||| ||||    
T  14422983 tcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttta 14423044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 15168174 - 15168235
Alignment:
Q  177 tcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttaccttaattta 237  Q
    ||||||||||||| ||||| |||||||| || ||||| |||  |||||||||||||||||||    
T  15168174 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttaattta 15168235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 20311133 - 20311052
Alignment:
Q  152 tatctcaagaacaatttatgttaaatcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttacctta 232  Q
    |||| ||||||||||| ||||||   |||||||||||| |||||  ||||||| |||||||| |||  ||||||||||||||    
T  20311133 tatcccaagaacaattcatgttacgacaattttcagaaattatacgttatgattattgagagatagtctcacccttacctta 20311052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 317
Target Start/End: Original strand, 12695673 - 12695705
Alignment:
Q  285 ttggctcttctccctttttctcccaaaagctct 317  Q
    |||||||||||| ||||||||||||||||||||    
T  12695673 ttggctcttctctctttttctcccaaaagctct 12695705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 317
Target Start/End: Original strand, 15143275 - 15143307
Alignment:
Q  285 ttggctcttctccctttttctcccaaaagctct 317  Q
    ||||||||||||||||||| |||||||||||||    
T  15143275 ttggctcttctccctttttatcccaaaagctct 15143307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 313
Target Start/End: Complemental strand, 16069589 - 16069561
Alignment:
Q  285 ttggctcttctccctttttctcccaaaag 313  Q
    |||||||||||||||||||||||||||||    
T  16069589 ttggctcttctccctttttctcccaaaag 16069561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 42042187 - 42042238
Alignment:
Q  202 atcattgagagttagcatcacccttaccttaatttacgaatcaaagctctaca 254  Q
    |||||||||||||||  ||||||||||||||||| | ||| ||||||||||||    
T  42042187 atcattgagagttagtctcacccttaccttaattgaagaa-caaagctctaca 42042238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 116738 - 116956
Alignment:
Q  18 aatctccctcaaattctgattacaacaacattctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatgattcctacacttttccttt 117  Q
    |||||||||||||||||||| ||||||||||| || |||  ||||||| ||| ||||||||  |||| ||||||||||||||||| |||||  |||||||    
T  116738 aatctccctcaaattctgatcacaacaacattatagattaagaaatcattctgaacacgaaaactaaacacattaaacatgattcttacaccattccttt 116837  T
Q  118 ctaaatcagtaatagaatcctaattcacaattccta-tctcaagaacaatttatgttaaatcaattttcag-aattatatattatgatcattgagagtta 215  Q
    | ||||||| |    || ||||||||  ||||  || | |||||||||||| |  ||| |||||||||||| ||||||||| |||||| |||||||| ||    
T  116838 caaaatcagca--tcaaccctaattctaaatttttattttcaagaacaattca-attagatcaattttcagaaattatatactatgattattgagagata 116934  T
Q  216 gcatcacccttaccttaattta 237  Q
    |  |||||||||||||||||||    
T  116935 gtctcacccttaccttaattta 116956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 330 - 400
Target Start/End: Complemental strand, 30344608 - 30344538
Alignment:
Q  330 aaaactgtttctctgactcttggttctattttctaataactcagtaaaacataacctcccacttatttctt 400  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30344608 aaaactgattctctgactcttggttctattttctaataactcggtaaaacataacctcccacttatttctt 30344538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 18408157 - 18407941
Alignment:
Q  18 aatctccctcaaattctgattacaacaacattctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatgattcctacacttttccttt 117  Q
    |||||||||||||||||||| ||| ||||||| || |||  ||||||| ||| |||| |||  |||| ||||||||||||||||| |||||  |||||||    
T  18408157 aatctccctcaaattctgatcacagcaacattatagattaagaaatcattctgaacatgaaaactaaacacattaaacatgattcttacaccattccttt 18408058  T
Q  118 ctaaatcagtaatagaatcctaattcacaattccta-tctcaagaacaatttatgttaaatcaattttcag-aattatatattatgatcattgagagtta 215  Q
    | ||||||| |    || |||||||| |||||  || | |||||||||||| |  ||| |||||||||||| |||||||||||||||| |||||||| ||    
T  18408057 caaaatcagca--tcaaccctaattcccaatttttattttcaagaacaattca-attagatcaattttcagaaattatatattatgattattgagagata 18407961  T
Q  216 gcatcacccttaccttaatt 235  Q
    |  |||||||||||||||||    
T  18407960 gtctcacccttaccttaatt 18407941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 394
Target Start/End: Complemental strand, 33472485 - 33472414
Alignment:
Q  324 tacgtgaaaactgtttctctgactcttggtt-ctattttctaataactcagtaaaacataacctcccactta 394  Q
    ||||||||||||||||||||||||    ||| ||| |||||||||| |||||||||||||||||||||||||    
T  33472485 tacgtgaaaactgtttctctgactgacagtttctagtttctaataattcagtaaaacataacctcccactta 33472414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 22438829 - 22438748
Alignment:
Q  152 tatctcaagaacaatttatgttaaatcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttacctta 232  Q
    |||| ||||||||||| |||||||  |||||||||||| ||||| |||||||| |||||||| |||  ||||||||||||||    
T  22438829 tatcccaagaacaattcatgttaagacaattttcagaaattatacattatgattattgagagatagtctcacccttacctta 22438748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 22340908 - 22341121
Alignment:
Q  27 caaattctgattacaacaacattctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatga-ttcctacacttttcctttctaaatca 125  Q
    ||||||| ||||||| ||||||| ||| | || |||||||||| || | |||||||||||| | | ||||||| ||| ||| |||||| || | ||||||    
T  22340908 caaattcggattacagcaacattataattcctaaaatcaatctgaatatgaattctaagcataattaacatgaattcttactcttttc-ttccaaaatca 22341006  T
Q  126 gtaatagaatcctaattcacaa-ttcctatct--caagaacaatttatgttaaatcaattttcagaatt-atatattatgatcattgagagttagcatca 221  Q
    ||| ||||| |||||||| ||| ||| ||| |  |||||||||||    | ||| ||||||||||||   ||||||||| ||||||||  |||||| |||    
T  22341007 gta-tagaaccctaattcccaaattcttatttttcaagaacaattctaatcaaaacaattttcagaaaccatatattataatcattgaaggttagcctca 22341105  T
Q  222 cccttaccttaattta 237  Q
    ||||||||||||||||    
T  22341106 cccttaccttaattta 22341121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 237
Target Start/End: Complemental strand, 23111350 - 23111195
Alignment:
Q  81 ctaagcacattaaacatgattcctacacttttcctttctaaatcagtaatagaatcctaattcacaattcctatct-caagaacaatttatgttaaatca 179  Q
    |||| ||||||||||||||||| |||||  | |||||| ||||||| |  |  | |||||||| |||||  ||| | ||||||||||| |  ||| ||||    
T  23111350 ctaaacacattaaacatgattcttacaccatccctttcaaaatcagcatca--accctaattcccaatttttattttcaagaacaattcaa-ttagatca 23111254  T
Q  180 attttcagaa-ttatatattatgatcattgagagttagcatcacccttaccttaattta 237  Q
    |||||||||| ||||||| |||||| |||||||| |||  |||||||||||||||||||    
T  23111253 attttcagaaattatatactatgattattgagagatagtctcacccttaccttaattta 23111195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 317
Target Start/End: Original strand, 21889626 - 21889672
Alignment:
Q  271 tctcttggctcctattggctcttctccctttttctcccaaaagctct 317  Q
    |||||||||||   |||||||||||||||||||||||||||||||||    
T  21889626 tctcttggctctacttggctcttctccctttttctcccaaaagctct 21889672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 25014626 - 25014670
Alignment:
Q  271 tctcttggctcctattggctcttctccctttttctcccaaaagct 315  Q
    |||||||||||   |||||||||||||||||||||||||||||||    
T  25014626 tctcttggctctacttggctcttctccctttttctcccaaaagct 25014670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 198 - 237
Target Start/End: Complemental strand, 8952075 - 8952036
Alignment:
Q  198 tatgatcattgagagttagcatcacccttaccttaattta 237  Q
    |||||| ||||||||||||| |||||||||||||||||||    
T  8952075 tatgattattgagagttagcctcacccttaccttaattta 8952036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 19512385 - 19512444
Alignment:
Q  177 tcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttaccttaatt 235  Q
    ||||||||||||| ||||| |||||||| |||||||| |||  |||||||||||||||||    
T  19512385 tcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttaatt 19512444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 28370111 - 28370052
Alignment:
Q  177 tcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttaccttaatt 235  Q
    ||||||||||||| ||||| |||||||| |||||||| |||  |||||||||||||||||    
T  28370111 tcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttaatt 28370052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 22777104 - 22777067
Alignment:
Q  198 tatgatcattgagagttagcatcacccttaccttaatt 235  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  22777104 tatgattattgagagttagcctcacccttaccttaatt 22777067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 21663208 - 21663143
Alignment:
Q  169 atgttaaatcaattttcagaatt---atatattatgatcattgagagttagcatcacccttacctta 232  Q
    ||||||||||||||| |||||||   ||| | |||||| ||||||||||||| ||||||||||||||    
T  21663208 atgttaaatcaattt-cagaatttacatacactatgattattgagagttagcctcacccttacctta 21663143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 38144593 - 38144537
Alignment:
Q  177 tcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttacctta 232  Q
    ||||||||||||| ||||| |||||||| |||||||| |||  ||||||||||||||    
T  38144593 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 38144537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 285 - 347
Target Start/End: Original strand, 10328 - 10390
Alignment:
Q  285 ttggctcttctccctttttctcccaaaagctcttgtttctacgtgaaaactgtttctctgact 347  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10328 ttggttcttctccctttttctcccaaaagctcttgtttctacgtgaaaactgtttctttgact 10390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 16665 - 16878
Alignment:
Q  21 ctccctcaaattctgattacaacaacattctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatgattcctacacttttcctttcta 120  Q
    |||||||||||| |||| ||||||||||| || |||  ||||||| ||| ||||||||  |||| ||||||||||||||||| || ||  |||||||| |    
T  16665 ctccctcaaattatgatcacaacaacattatagattaagaaatcattctgaacacgaaaactaaacacattaaacatgattcttaaaccattcctttcaa 16764  T
Q  121 aatcagtaatagaatcctaattcacaattccta-tctcaagaacaatttatgttaaatcaattttcag-aattatatattatgatcattgagagttagca 218  Q
    |||||| |    || |||||||| |||||  || | |||||||||||| |  ||| |||||||||||| ||||||||| |||||| |||||||| |||      
T  16765 aatcagca--tcaaccctaattcccaatttttattttcaagaacaattca-attagatcaattttcagaaattatatactatgattattgagagatagtc 16861  T
Q  219 tcacccttaccttaatt 235  Q
    |||||||||||||||||    
T  16862 tcacccttaccttaatt 16878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 26 - 232
Target Start/End: Original strand, 135322 - 135528
Alignment:
Q  26 tcaaattctgattacaacaacattctaaattctgaaatcaatctaaaca-cgaattctaagcacattaaacatgattcctacacttttcctttctaaatc 124  Q
    |||||||||||| ||||||||||| || |||  ||||||| ||| |||| | ||||  || ||||||||||||||| | |||||  |||||||| |||||    
T  135322 tcaaattctgatcacaacaacattatagattaagaaatcattctgaacatcaaattacaa-cacattaaacatgatccttacaccattcctttcaaaatc 135420  T
Q  125 agtaatagaatcctaatt-cacaattcctatctcaagaacaatttatgttaaatcaattttcag-aattatatattatgatcattgagagttagcatcac 222  Q
    || |  |  | ||||||| | |||||  |||||||||||||||| |||||||| |||||||||| ||||||||| |||||| |||||||| |||  ||||    
T  135421 agcatca--accctaatttcccaatttttatctcaagaacaattcatgttaaaacaattttcagaaattatatactatgattattgagagatagtctcac 135518  T
Q  223 ccttacctta 232  Q
    ||||||||||    
T  135519 ccttacctta 135528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 34288 - 34500
Alignment:
Q  27 caaattctgattacaacaacattctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatgattcct-acacttttcctttctaaatca 125  Q
    ||||||| ||||||| ||||||| ||| | || ||||| |||| || | |||||||||||| | | ||||||| |||| || |||||| || | ||||||    
T  34288 caaattcggattacagcaacattataattcctaaaatcgatctgaatatgaattctaagcataattaacatgaatccttactcttttc-ttccaaaatca 34386  T
Q  126 gtaatagaatcctaattcacaattcctatct--caagaacaatttatgttaaatcaattttcagaatt-atatattatgatcattgagagttagcatcac 222  Q
    ||| ||||| |||||||| |||||| ||| |  |||||||||||    | ||| ||||||||||||   ||||||||| ||| ||||  |||||| ||||    
T  34387 gta-tagaaccctaattcccaattcttatttttcaagaacaattctaatcaaaacaattttcagaaaccatatattataatctttgaaggttagcctcac 34485  T
Q  223 ccttaccttaattta 237  Q
    |||||||||||||||    
T  34486 ccttaccttaattta 34500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 86 - 231
Target Start/End: Complemental strand, 22738 - 22594
Alignment:
Q  86 cacattaaacatgattcctacacttttcctttctaaatcagtaatagaatcctaattcacaattcctatctcaagaacaatttatgttaaatcaattttc 185  Q
    ||||||||||||||||| |||||  ||||||||  |||||| |  |  | |||||||| |||||  |||||||||||||||| |||||||| | ||||||    
T  22738 cacattaaacatgattcttacaccattcctttcagaatcagcatca--accctaattcccaatttttatctcaagaacaattcatgttaaaacgattttc 22641  T
Q  186 ag-aattatatattatgatcattgagagttagcatcacccttacctt 231  Q
    || ||||||||| |||||| |||||||| |||  |||||||||||||    
T  22640 agaaattatatactatgattattgagagatagtctcacccttacctt 22594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 1424 - 1508
Alignment:
Q  152 tatctcaagaacaatttatgttaaatcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttaccttaattt 236  Q
    |||||||||||||||| |||||||| |||||| ||||| ||||| |||| ||||||||||||||||  ||||||||||||||||||    
T  1424 tatctcaagaacaattcatgttaaaacaattt-cagaaattatacattaagatcattgagagttagtctcacccttaccttaattt 1508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 40613 - 40532
Alignment:
Q  152 tatctcaagaacaatttatgttaaatcaattttcag-aattatatattatgatcattgagagttagcatcacccttacctta 232  Q
    |||||||||||||||| |||||||| |||||||||| ||||||||| |||||| |||||||| |||  ||||||||||||||    
T  40613 tatctcaagaacaattcatgttaaaacaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 40532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 3874 - 3942
Alignment:
Q  169 atgttaaatcaattttcagaatt---atatattatgatcattgagagttagcatcacccttaccttaatt 235  Q
    ||||||||||||||| |||||||   ||| | |||||| ||||||||||||| |||||||||||||||||    
T  3874 atgttaaatcaattt-cagaattcacatacactatgattattgagagttagcctcacccttaccttaatt 3942  T

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Target: scaffold0317 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 1229 - 1441
Alignment:
Q  18 aatctccctcaaattctgattacaacaacattctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatgattcctacacttttccttt 117  Q
    |||||||||||| ||||||| |||  |||||| || |||  ||||||| ||| ||||||||  ||||||||| ||||||| |||| |||||  |||||||    
T  1229 aatctccctcaa-ttctgatcacagtaacattatagattaagaaatcattctgaacacgaacactaagcacaataaacataattcttacaccattccttt 1327  T
Q  118 ctaaatcagtaatagaatcctaattcacaattcctatc-tcaagaacaatttatgttaaatcaattttcagaa-ttatatattatgatcattgagagtta 215  Q
    | ||||||| |  | || |||||||| || ||  |||| ||||||||||||||  ||| ||||||||||| || |||||||| ||||||||||| || ||    
T  1328 caaaatcagcatca-aaccctaattctcagttt-tatcatcaagaacaatttaa-ttagatcaattttcaaaaattatatatcatgatcattgaaagata 1424  T
Q  216 gcatcacccttacctta 232  Q
    |  ||||||||||||||    
T  1425 gtctcacccttacctta 1441  T

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Target: scaffold1555 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1555
Description:

Target: scaffold1555; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 394
Target Start/End: Original strand, 294 - 365
Alignment:
Q  324 tacgtgaaaactgtttctctgactcttggtt-ctattttctaataactcagtaaaacataacctcccactta 394  Q
    ||||||||||||||||||||||||    ||| | |||||||||||| |||||||||||||||||||||||||    
T  294 tacgtgaaaactgtttctctgactgacagtttccattttctaataattcagtaaaacataacctcccactta 365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 353 - 394
Target Start/End: Original strand, 11806 - 11847
Alignment:
Q  353 ttctattttctaataactcagtaaaacataacctcccactta 394  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  11806 ttctattttctaataattcagtaaaacataacctcccactta 11847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 1183 - 1138
Alignment:
Q  260 cagaatctttctctcttggctcctattggctcttctccctttttct 305  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||    
T  1183 cagaatctttctctcttggctcttattggctcttctcccttgttct 1138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 235
Target Start/End: Complemental strand, 213 - 5
Alignment:
Q  26 tcaaattctgattacaacaacattctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatgattcctacacttttcctttctaaatca 125  Q
    |||||||||||  |||||||| || || |||  ||||||| ||| ||||| || |  || | ||||||||||||||| |||||  |||||||| ||||||    
T  213 tcaaattctgaccacaacaacgttatagattaagaaatcattctgaacactaaattaaaactcattaaacatgattcttacaccattcctttcaaaatca 114  T
Q  126 gtaatagaatcctaattcacaattcctatct-caagaacaatttatgttaaatcaattttcagaa-ttatatattatgatcattgagagttagcatcacc 223  Q
    | || |  | |||||||| |||||  ||| | ||||||||||| |  ||| |||||||||||||| |||| ||||| ||| |||||||| |||  |||||    
T  113 gcaaca--accctaattcccaatttttattttcaagaacaattcaa-ttagatcaattttcagaaattatgtattaagattattgagagatagtctcacc 17  T
Q  224 cttaccttaatt 235  Q
    ||||||||||||    
T  16 cttaccttaatt 5  T

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Target: scaffold0395 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 341
Target Start/End: Complemental strand, 1319 - 1264
Alignment:
Q  285 ttggctcttctccctttttctcccaaaagctcttgtttctacgtgaaaactgtttct 341  Q
    |||||||||||||||||| ||||||||||||||| ||||||||| ||||| ||||||    
T  1319 ttggctcttctcccttttcctcccaaaagctcttctttctacgt-aaaacagtttct 1264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 71287 - 71242
Alignment:
Q  293 tctccctttttctcccaaaagctcttgtttctacgtgaaaactgttt 339  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||    
T  71287 tctccctttttctcccaaaagctcttgtttgtacgt-aaaactgttt 71242  T

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Target: scaffold0037; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 71550 - 71338
Alignment:
Q  27 caaattctgattacaacaacattctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatgattcct-acacttttcctttctaaatca 125  Q
    ||||||| |||||||||||| || ||| | || ||||| |||| || | |||||||||||| | | ||||||| |||| || |||||| || | ||||||    
T  71550 caaattcggattacaacaacgttataattcctaaaatcgatctgaatatgaattctaagcataattaacatgaatccttactcttttc-ttccaaaatca 71452  T
Q  126 gtaatagaatcctaattcacaattcctatct--caagaacaatttatgttaaatcaattttcagaatt-atatattatgatcattgagagttagcatcac 222  Q
    ||| ||||| |||||||| |||||| ||| |  |||||||||||    | ||| ||||||| |||| | |||| |||| ||||||||  |||||| |||     
T  71451 gta-tagaaccctaattcccaattcttatttttcaagaacaattcgaatcaaaacaatttttagaaatcatatgttataatcattgaaggttagcctcat 71353  T
Q  223 ccttaccttaattta 237  Q
    |||||||||||||||    
T  71352 ccttaccttaattta 71338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0429 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 2065 - 1995
Alignment:
Q  169 atgttaaatcaattttcagaatt---atatattatgatcattgagagttagcatcacccttaccttaattta 237  Q
    ||||||||||||||| |||||||   ||| | |||||| ||||||||||||| |||||||||||||||||||    
T  2065 atgttaaatcaattt-cagaatttgcatacactatgattattgagagttagcctcacccttaccttaattta 1995  T

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Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 353 - 394
Target Start/End: Original strand, 176952 - 176993
Alignment:
Q  353 ttctattttctaataactcagtaaaacataacctcccactta 394  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  176952 ttctattttctaataatccagtaaaacataacctcccactta 176993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1290 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1290
Description:

Target: scaffold1290; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 362 - 330
Alignment:
Q  285 ttggctcttctccctttttctcccaaaagctct 317  Q
    |||||||||||||||||||||||||||||||||    
T  362 ttggctcttctccctttttctcccaaaagctct 330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0575 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0575
Description:

Target: scaffold0575; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 317
Target Start/End: Original strand, 9564 - 9596
Alignment:
Q  285 ttggctcttctccctttttctcccaaaagctct 317  Q
    |||||||||||||||||||||||||||||||||    
T  9564 ttggctcttctccctttttctcccaaaagctct 9596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0377 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 344
Target Start/End: Original strand, 4253 - 4312
Alignment:
Q  285 ttggctcttctc-cctttttctcccaaaagctcttgtttctacgtgaaaactgtttctctg 344  Q
    |||||||||||| || |||||||||||||| |||||||||||||| ||||| |||||||||    
T  4253 ttggctcttctctcccttttctcccaaaag-tcttgtttctacgtaaaaacagtttctctg 4312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0377; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 344
Target Start/End: Original strand, 8292 - 8351
Alignment:
Q  285 ttggctcttctc-cctttttctcccaaaagctcttgtttctacgtgaaaactgtttctctg 344  Q
    |||||||||||| || |||||||||||||| |||||||||||||| ||||| |||||||||    
T  8292 ttggctcttctctcccttttctcccaaaag-tcttgtttctacgtaaaaacagtttctctg 8351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 59547 - 59515
Alignment:
Q  285 ttggctcttctccctttttctcccaaaagctct 317  Q
    |||||||||||||||||||||||||||||||||    
T  59547 ttggctcttctccctttttctcccaaaagctct 59515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 61111 - 61079
Alignment:
Q  285 ttggctcttctccctttttctcccaaaagctct 317  Q
    |||||||||||||||||||||||||||| ||||    
T  61111 ttggctcttctccctttttctcccaaaaactct 61079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 317
Target Start/End: Original strand, 36640 - 36672
Alignment:
Q  285 ttggctcttctccctttttctcccaaaagctct 317  Q
    |||||||||||||||||||||||||||||||||    
T  36640 ttggctcttctccctttttctcccaaaagctct 36672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 11907 - 11851
Alignment:
Q  177 tcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttacctta 232  Q
    ||||||||||||| ||||| |||||||| |||||||| |||  ||||||||||||||    
T  11907 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 11851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 111684 - 111740
Alignment:
Q  177 tcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttacctta 232  Q
    ||||||||||||| ||||| |||||||| |||||||| |||  ||||||||||||||    
T  111684 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 111740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 101985 - 101925
Alignment:
Q  176 atcaattttcag-aattatatattatgatcattgagagttagcatcacccttaccttaatt 235  Q
    |||||||||||| ||||||||| |||||| |||||||| |||  |||||||||||||||||    
T  101985 atcaattttcaggaattatatactatgattattgagagatagtctcacccttaccttaatt 101925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0562 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0562
Description:

Target: scaffold0562; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 2825 - 2779
Alignment:
Q  285 ttggctcttctccctttttctcccaaaagctcttgtttctacgtgaaa 332  Q
    |||||||||||||||||||||||||||| ||| ||||| |||||||||    
T  2825 ttggctcttctccctttttctcccaaaaactc-tgtttgtacgtgaaa 2779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 10094 - 10172
Alignment:
Q  29 aattctgattacaacaacattctaaattctgaaatcaatctaaacacgaattctaagcacattaaacatgattcctacac 108  Q
    ||||||||| ||||||||||| || |||  ||||||| ||||||||| ||  |||| ||||||||||||||||| |||||    
T  10094 aattctgatcacaacaacattatagattaagaaatcattctaaacactaa-actaaacacattaaacatgattcttacac 10172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 347
Target Start/End: Complemental strand, 174056 - 173997
Alignment:
Q  285 ttggctcttctccctttttctcccaaaagctcttgtttctacgtgaaaactgtttctctgact 347  Q
    |||||| ||||||||||||||||||||||  ||||||| |||||| ||||||||| |||||||    
T  174056 ttggcttttctccctttttctcccaaaag--cttgtttttacgtg-aaactgtttttctgact 173997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 317
Target Start/End: Complemental strand, 23157 - 23127
Alignment:
Q  287 ggctcttctccctttttctcccaaaagctct 317  Q
    |||||||||||||||||||||||||||||||    
T  23157 ggctcttctccctttttctcccaaaagctct 23127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 332
Target Start/End: Original strand, 27366 - 27427
Alignment:
Q  271 tctcttggctcctattggctcttctccc-tttttctcccaaaagctcttgtttctacgtgaaa 332  Q
    |||||||||||   |||||||||||||| |||||||||||||||||| ||||| |||||||||    
T  27366 tctcttggctctacttggctcttctcccttttttctcccaaaagctc-tgtttgtacgtgaaa 27427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1276 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1276
Description:

Target: scaffold1276; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 1160 - 1217
Alignment:
Q  202 atcattgagagttagcatcacccttaccttaatttacgaatcaaagctctacaaaatc 259  Q
    |||||||||||||||| ||||||||||||||  ||   || |||||||||||||||||    
T  1160 atcattgagagttagcctcacccttaccttagattgataaacaaagctctacaaaatc 1217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 8526 - 8575
Alignment:
Q  184 tcagaattatatat-tatgatcattgagagttagcatcacccttacctta 232  Q
    ||||||||||| || ||| |||||||||||||||| ||||||||||||||    
T  8526 tcagaattatacatctataatcattgagagttagcctcacccttacctta 8575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 334
Target Start/End: Complemental strand, 4442 - 4398
Alignment:
Q  289 ctcttctccctttttctcccaaaagctcttgtttctacgtgaaaac 334  Q
    |||||||||||||||||||||||||||| ||||| ||||| |||||    
T  4442 ctcttctccctttttctcccaaaagctc-tgtttgtacgtaaaaac 4398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 8810 - 8765
Alignment:
Q  192 atatattatgatcattgagagttagcatcacccttaccttaattta 237  Q
    ||||||||| ||||||||  |||||| |||||||||||||||||||    
T  8810 atatattataatcattgaaggttagcctcacccttaccttaattta 8765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 17625 - 17698
Alignment:
Q  160 gaacaatttatgttaaatcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttacctta 232  Q
    |||||||| |||||||  |||||||||||| ||||| |||||| | |||||||| |||  ||||||||||||||    
T  17625 gaacaattcatgttaagacaattttcagaaattatacattatggttattgagagatagtctcacccttacctta 17698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 235
Target Start/End: Original strand, 7693 - 7730
Alignment:
Q  198 tatgatcattgagagttagcatcacccttaccttaatt 235  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  7693 tatgattattgagagttagcctcacccttaccttaatt 7730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 37157 - 37194
Alignment:
Q  260 cagaatctttctctcttggctcctattggctcttctcc 297  Q
    |||||||||||||||||||||| | |||||||||||||    
T  37157 cagaatctttctctcttggctcttcttggctcttctcc 37194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 281
Target Start/End: Original strand, 53898 - 53931
Alignment:
Q  248 ctctacaaaatccagaatctttctctcttggctc 281  Q
    ||||||||||| ||||||||||||||||||||||    
T  53898 ctctacaaaattcagaatctttctctcttggctc 53931  T

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Target: scaffold0962 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0962
Description:

Target: scaffold0962; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 681 - 616
Alignment:
Q  169 atgttaaatcaattttcagaatt---atatattatgatcattgagagttagcatcacccttacctta 232  Q
    ||||||||||||||| |||||||   ||| | |||||| ||||||||||||| ||||||||||||||    
T  681 atgttaaatcaattt-cagaatttacatacactatgattattgagagttagcctcacccttacctta 616  T

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Target: scaffold0924 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 807 - 751
Alignment:
Q  177 tcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttacctta 232  Q
    ||||||||||||| ||||| |||||||| |||||||| |||  ||||||||||||||    
T  807 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 751  T

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Target: scaffold0635 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 7979 - 8034
Alignment:
Q  202 atcattgagagttagcatcacccttacctt-aatttacgaatcaaagctctacaaaa 257  Q
    |||||||||||||||| ||||||||||||| |||| | ||| |||||||||||||||    
T  7979 atcattgagagttagcctcacccttaccttgaattgatgaa-caaagctctacaaaa 8034  T

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Target: scaffold0247 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 11340 - 11396
Alignment:
Q  177 tcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttacctta 232  Q
    ||||||||||||| ||||| |||||||| |||||||| |||  ||||||||||||||    
T  11340 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 11396  T

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Target: scaffold0203 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 365
Target Start/End: Complemental strand, 16348 - 16285
Alignment:
Q  299 tttttctcccaaaagctcttgtttctacgtgaaaactgtttctctgactcttggttctattttctaa 365  Q
    ||||||||||||||   |||| || ||||||||||||||||||||||||  |  |||||||||||||    
T  16348 tttttctcccaaaa---cttgattgtacgtgaaaactgtttctctgacttctctttctattttctaa 16285  T

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Target: scaffold0154 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 30856 - 30912
Alignment:
Q  177 tcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttacctta 232  Q
    ||||||||||||| ||||| |||||||| |||||||| |||  ||||||||||||||    
T  30856 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 30912  T

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Target: scaffold0146 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 13630 - 13690
Alignment:
Q  176 atcaattttcagaa-ttatatattatgatcattgagagttagcatcacccttaccttaatt 235  Q
    |||||||||||||| |||| ||||| ||| |||||||| |||  |||||||||||||||||    
T  13630 atcaattttcagaaattatgtattaagattattgagagatagtctcacccttaccttaatt 13690  T

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