View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17509_low_4 (Length: 389)
Name: NF17509_low_4
Description: NF17509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17509_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 2836211 - 2836571
Alignment:
| Q |
1 |
agattcattctaaacatacacaaatatccattctaaattgttcgatcatacaggtcagagaagagaaactgaaatgtttaaaactggttcaattagtttc |
100 |
Q |
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| T |
2836211 |
agattcattctaaacatacaccaatatccattctaaattgttcgatcatacaggtcagagaagagaaactgaaatgtttaaaactggttcaattagt--- |
2836307 |
T |
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| Q |
101 |
tcatatatgacctttgcgattgaacaattttaaacatttgttccctacacttttacttgtatgaatgattacaatctctagaattaattagtaaaaactt |
200 |
Q |
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| T |
2836308 |
--------gacctttgcgattgaacaattttaaacatttgttccctacacttttacttgtatgaatgattacaatctctagaattaattagtacaaactt |
2836399 |
T |
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| Q |
201 |
ttcctgtaaagattttttatggtattaaacaaggctagttctaatgtgtacaaaccatgtagattgtgcaaggtaagcaactattttcgtccatatgatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2836400 |
ttcctgtaaagattttttatggtattaaacaaggctagttctaatgtgtacaaaccatgtagattgtgcaaggtaagcaactattttcgtccatatgatt |
2836499 |
T |
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| Q |
301 |
gaacagtttcatagatcaaaaggtgattcgtctacacaaaatctgagctcaaatactttgtaattgtagaat |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2836500 |
gaacagtttcatagatcaaaaggtgattcgtctacacaaaatctgagctcaaatactttgtaattgtagaat |
2836571 |
T |
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