View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17509_low_5 (Length: 374)

Name: NF17509_low_5
Description: NF17509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17509_low_5
NF17509_low_5
[»] chr8 (1 HSPs)
chr8 (18-294)||(13470521-13470797)
[»] chr3 (3 HSPs)
chr3 (18-273)||(13796285-13796544)
chr3 (132-261)||(20593700-20593832)
chr3 (18-273)||(4696155-4696414)
[»] chr5 (1 HSPs)
chr5 (20-272)||(28584250-28584506)
[»] chr7 (1 HSPs)
chr7 (40-181)||(9716919-9717060)
[»] chr4 (3 HSPs)
chr4 (40-181)||(13583186-13583327)
chr4 (103-238)||(23970284-23970422)
chr4 (130-261)||(31234110-31234244)
[»] scaffold0102 (1 HSPs)
scaffold0102 (18-273)||(2489-2748)
[»] chr1 (1 HSPs)
chr1 (18-273)||(23419279-23419538)
[»] chr6 (3 HSPs)
chr6 (145-220)||(5154819-5154894)
chr6 (29-234)||(15525978-15526187)
chr6 (145-217)||(22841326-22841398)
[»] chr2 (1 HSPs)
chr2 (18-213)||(37174589-37174785)


Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 13470521 - 13470797
Alignment:
Q  18 attatcattcatggtccatgaaatgcgaagagcgttggctataaagaacaaattcaaatttgtggacggttgaattcgaatttcagatgaagattatttg 117  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  13470521 attatcattcatggtccatgaaatgcgaagagcattggctataaagaacaaattcaaatttgtggacgcttgaattcgaatttcaaatgaagattatttg 13470620  T
Q  118 aattgtgctgcatgggaaatgtgtaacaatcttgttcgtacctggataatcaattcaatttcactgtcaattgctcaaagtgttgtgttcatagaaaatg 217  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  13470621 aattgtgctgcatgggaaatgtgtaacaatcttgttcatacctggataatcaattcaatttcaccgtcaattgctcaaagtgttgtgttcatagaaaatg 13470720  T
Q  218 ttgatatgtgaaatgatcttaaggaccgattcatgagaggagatcatattagagtgacagttacaactaggggtgtt 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13470721 ttgatatgtgaaatgatcttaaggaccgattcatgagaggagatcatattagagtgacaattacaactaggggtgtt 13470797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 6e-53; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 13796544 - 13796285
Alignment:
Q  18 attatcattcatggtccatgaa-atgcgaagagcgttggctataaagaacaaattcaaatttgtggacggttgaattcgaatttcagatgaagattattt 116  Q
    |||||||||| | ||||||||| ||||||||||| |||||||| |||||||| || || ||||||||||||| ||||| |||| || |  ||||| ||||    
T  13796544 attatcattcctagtccatgaagatgcgaagagcattggctatgaagaacaagtttaagtttgtggacggttcaattccaattccatacaaagatgattt 13796445  T
Q  117 gaattgtgctgcatgggaaatgtgtaacaatcttgttcgtacctggataatcaattcaatttcactgtcaattgctcaaagtgttgtgttcatagaaaa- 215  Q
    ||||  |||||||||| ||| ||||||||||||||||| ||| | ||||||||||| |||||||  | ||||||||||||| |||||||||||| ||||     
T  13796444 gaatcatgctgcatggaaaaggtgtaacaatcttgttcatacatagataatcaattaaatttcatcgacaattgctcaaagcgttgtgttcatataaaat 13796345  T
Q  216 --tgttgatatgtgaaatgatcttaaggaccgattcatgagaggagatcatattagagtg 273  Q
      |||||||||||| || |||||||||||  ||||||||||||| |||| ||||||||||    
T  13796344 gttgttgatatgtggaacgatcttaaggattgattcatgagaggtgatcgtattagagtg 13796285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 132 - 261
Target Start/End: Original strand, 20593700 - 20593832
Alignment:
Q  132 ggaaatgtgtaacaatcttgttcgtacctggataatcaattcaatttcactgtcaattgctcaaagtgttgtgttcatagaaaa---tgttgatatgtga 228  Q
    ||||| ||| || |||||||||  ||| |||||||||||||| ||||| |  ||||||||||||||||| ||||||||||||||   |||||||||||||    
T  20593700 ggaaaggtgcaataatcttgtttatacttggataatcaattctatttcgccttcaattgctcaaagtgtagtgttcatagaaaatgttgttgatatgtga 20593799  T
Q  229 aatgatcttaaggaccgattcatgagaggagat 261  Q
    ||||||||||| ||  |||||||||||||||||    
T  20593800 aatgatcttaaagatagattcatgagaggagat 20593832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 4696414 - 4696155
Alignment:
Q  18 attatcattcatggtccatgaa-atgcgaagagcgttggctataaagaacaaattcaaatttgtggacggttgaattcgaatttcagatgaagattattt 116  Q
    |||||||||| ||||| ||||| ||||| ||||| ||||| || || ||||||||||| ||||| || || |  |||  | || |||||||| |  || |    
T  4696414 attatcattcttggtcaatgaagatgcgtagagctttggcgatgaaaaacaaattcaagtttgttgatggatctattgaagttccagatgaacacgatct 4696315  T
Q  117 gaattgtgctgcatgggaaatgtgtaacaatcttgttcgtacctggataatcaattcaatttcactgtcaattgctcaaagtgttgtgttcatagaaaat 216  Q
     ||| ||||||| ||||||| ||| || |||||||||| ||| |||||||| ||||| ||||| |  |||||||| ||||||||||| ||||| || |||    
T  4696314 caatcgtgctgcttgggaaaggtgcaataatcttgttcatacttggataattaattcgatttcgccatcaattgcgcaaagtgttgttttcattgagaat 4696215  T
Q  217 g---ttgatatgtgaaatgatcttaaggaccgattcatgagaggagatcatattagagtg 273  Q
    |   | |||||||| |||||||| || || || |||||||||||||||| ||||||||||    
T  4696214 gctatggatatgtggaatgatctcaaagatcgtttcatgagaggagatcgtattagagtg 4696155  T

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Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 28584506 - 28584250
Alignment:
Q  20 tatcattcatggtccatgaa-atgcgaagagcgttggctataaagaacaaattcaaatttgtggacggttgaattcgaatttcagatgaagattatttga 118  Q
    ||||| || ||||||||||| ||||||||||| |||||||| |||||||| |||||||| || |||||||  || | |||| |||||| |||| | ||||    
T  28584506 tatcaatcctggtccatgaagatgcgaagagctttggctatgaagaacaagttcaaattcgtagacggttttataccaattccagatgcagatgacttga 28584407  T
Q  119 attgtgctgcatgggaaatgtgtaacaatcttgttcgtacctggataatcaattcaatttcactgtcaattgctcaaagtgttgtgttcatagaaaat-- 216  Q
    |||||||||| |  |||| ||| || |||||||||| ||||||||||||||||||  |||||| |||||||||||| |||||||| |  |||||||||      
T  28584406 attgtgctgcttacgaaaggtgcaataatcttgttcatacctggataatcaattccgtttcaccgtcaattgctcagagtgttgtctctatagaaaatgt 28584307  T
Q  217 -gttgatatgtgaaatgatcttaaggaccgattcatgagaggagatcatattagagt 272  Q
     ||||||||||| ||||||||||| || || || |||||| | | || |||||||||    
T  28584306 tgttgatatgtggaatgatcttaaagatcgttttatgagatgtggtcgtattagagt 28584250  T

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Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 40 - 181
Target Start/End: Complemental strand, 9717060 - 9716919
Alignment:
Q  40 atgcgaagagcgttggctataaagaacaaattcaaatttgtggacggttgaattcgaatttcagatgaagattatttgaattgtgctgcatgggaaatgt 139  Q
    ||||||||||| |||||||| |||||||| ||||| |||||||||   | ||||| |||| || |||||||| ||||||||| || |||||||| || ||    
T  9717060 atgcgaagagcattggctatgaagaacaagttcaagtttgtggacaactaaattccaattacaaatgaagatgatttgaattatgatgcatgggtaaggt 9716961  T
Q  140 gtaacaatcttgttcgtacctggataatcaattcaatttcac 181  Q
    ||||||||||||||  ||||| ||||||||||||||||||||    
T  9716960 gtaacaatcttgttaatacctagataatcaattcaatttcac 9716919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 40 - 181
Target Start/End: Complemental strand, 13583327 - 13583186
Alignment:
Q  40 atgcgaagagcgttggctataaagaacaaattcaaatttgtggacggttgaattcgaatttcagatgaagattatttgaattgtgctgcatgggaaatgt 139  Q
    ||||||||||| |||||||| |||||||| ||||| |||||||||   | ||||| |||| || |||||||| ||||||||| || |||||||| || ||    
T  13583327 atgcgaagagcattggctatgaagaacaagttcaagtttgtggacaactaaattccaattacaaatgaagatgatttgaattatgatgcatgggtaaggt 13583228  T
Q  140 gtaacaatcttgttcgtacctggataatcaattcaatttcac 181  Q
    ||||||||||||||  ||||| ||||||||||||||||||||    
T  13583227 gtaacaatcttgttaatacctagataatcaattcaatttcac 13583186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 103 - 238
Target Start/End: Original strand, 23970284 - 23970422
Alignment:
Q  103 gatgaagattatttgaattgtgctgcatgggaaatgtgtaacaatcttgttcgtacctggataatcaattcaatttcactgtcaattgctcaaagtgttg 202  Q
    ||||||||| |||||||| |   ||||||||||| ||| || |||||||||| |||  ||||||||||||| |||||  | || ||||||||||||||||    
T  23970284 gatgaagatgatttgaatcggattgcatgggaaaggtgcaataatcttgttcatacacggataatcaattctatttcgttatctattgctcaaagtgttg 23970383  T
Q  203 tgttcatagaaaa---tgttgatatgtgaaatgatctta 238  Q
    |||| ||||||||   |||||||||||| ||||||||||    
T  23970384 tgtttatagaaaatgttgttgatatgtggaatgatctta 23970422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 130 - 261
Target Start/End: Complemental strand, 31234244 - 31234110
Alignment:
Q  130 tgggaaatgtgtaacaatcttgttcgtacctggataatcaattcaatttcactgtcaattgctcaaagtgttgtgttcatagaaaatg---ttgatatgt 226  Q
    ||||||| ||| || |||||||||| ||| |||||||||||||| |||||||  |||||||| |||||||| ||||| ||||||||||   |||||||||    
T  31234244 tgggaaaggtgcaataatcttgttcatacttggataatcaattctatttcaccttcaattgcgcaaagtgtagtgtttatagaaaatgctattgatatgt 31234145  T
Q  227 gaaatgatcttaaggaccgattcatgagaggagat 261  Q
    | ||||| || || ||  ||||| |||||||||||    
T  31234144 ggaatgacctaaaagatagattcgtgagaggagat 31234110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 2489 - 2748
Alignment:
Q  18 attatcattcatggtccatgaa-atgcgaagagcgttggctataaagaacaaattcaaatttgtggacggttgaattcgaatttcagatgaagattattt 116  Q
    |||||||||| ||||| ||||| ||||| ||||| ||||| || || ||||||||||| ||||| || || |  |||  | || |||||||| |  || |    
T  2489 attatcattcttggtcaatgaagatgcgtagagctttggcgatgaaaaacaaattcaagtttgttgatggatctattgaagttccagatgaacacgatct 2588  T
Q  117 gaattgtgctgcatgggaaatgtgtaacaatcttgttcgtacctggataatcaattcaatttcactgtcaattgctcaaagtgttgtgttcatagaaaat 216  Q
     ||| ||||||| ||||||| ||| || |||||||||| ||| |||||||| ||||| ||||| |  |||||||| ||||||||||| ||||| || |||    
T  2589 caatcgtgctgcttgggaaaggtgcaataatcttgttcatacttggataattaattcgatttcgccatcaattgcgcaaagtgttgttttcattgagaat 2688  T
Q  217 g---ttgatatgtgaaatgatcttaaggaccgattcatgagaggagatcatattagagtg 273  Q
    |   | |||||||| |||||||| || || || |||||||||||||||| ||||||||||    
T  2689 gctatggatatgtggaatgatctcaaagatcgtttcatgagaggagatcgtattagagtg 2748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 23419538 - 23419279
Alignment:
Q  18 attatcattcatggtccatgaa-atgcgaagagcgttggctataaagaacaaattcaaatttgtggacggttgaattcgaatttcagatgaagattattt 116  Q
    |||||||||| ||||| ||||| ||||| ||||| ||||| || || ||||||||||| ||||| || || |  |||  | || |||||||| |  || |    
T  23419538 attatcattcttggtcaatgaagatgcgtagagctttggcgatgaaaaacaaattcaagtttgttgatggatctattgaagttccagatgaacacgatct 23419439  T
Q  117 gaattgtgctgcatgggaaatgtgtaacaatcttgttcgtacctggataatcaattcaatttcactgtcaattgctcaaagtgttgtgttcatagaaaat 216  Q
     |||  |||||| ||||||| ||| || |||||||||| ||| |||||||| ||||| ||||| |  |||||||| ||||||||||| ||||| || |||    
T  23419438 caatcttgctgcttgggaaaggtgcaataatcttgttcatacttggataattaattcgatttcgccatcaattgcgcaaagtgttgttttcattgagaat 23419339  T
Q  217 g---ttgatatgtgaaatgatcttaaggaccgattcatgagaggagatcatattagagtg 273  Q
    |   | |||||||| |||||||| || || || |||||||||||||||| ||||||||||    
T  23419338 gctatggatatgtggaatgatctcaaagatcgtttcatgagaggagatcgtattagagtg 23419279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 5154894 - 5154819
Alignment:
Q  145 aatcttgttcgtacctggataatcaattcaatttcactgtcaattgctcaaagtgttgtgttcatagaaaatgttg 220  Q
    |||||||||| ||||||||||| |||||| |||||||  ||||||||||||||||| |||||  ||||||||||||    
T  5154894 aatcttgttcatacctggataaccaattctatttcaccttcaattgctcaaagtgtagtgtttgtagaaaatgttg 5154819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 234
Target Start/End: Complemental strand, 15526187 - 15525978
Alignment:
Q  29 tggtccatgaa-atgcgaagagcgttggctataaagaacaaattcaaatttgtggacggttgaattcgaatttcagatgaagattatttgaattgtgctg 127  Q
    ||||||||||| ||| ||||||| |||||||| ||||| || ||||| ||||| || ||||  || | |||| ||||||| ||| |||||||| |   ||    
T  15526187 tggtccatgaagatgagaagagcattggctatgaagaaaaagttcaagtttgttgatggttctataccaattccagatgatgatgatttgaatcggagtg 15526088  T
Q  128 catgggaaatgtgtaacaatcttgttcgtacctggataatcaattcaatttcactgtcaattgctcaaagtgttgtgttcatagaaaat---gttgatat 224  Q
    | ||||||| ||| || |||||||||| ||  ||||| || || |||||| |||  || ||||| |||||| | || ||||||||||||   || |||||    
T  15526087 cttgggaaaggtgcaataatcttgttcatatatggattattaactcaattacaccttccattgcacaaagtatggttttcatagaaaatgcagtggatat 15525988  T
Q  225 gtgaaatgat 234  Q
    ||||||||||    
T  15525987 gtgaaatgat 15525978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 22841326 - 22841398
Alignment:
Q  145 aatcttgttcgtacctggataatcaattcaatttcactgtcaattgctcaaagtgttgtgttcatagaaaatg 217  Q
    |||||||||| ||| ||||| ||||| |||||| |||  || ||||| |||||||| || |||||||||||||    
T  22841326 aatcttgttcatacatggattatcaactcaattacaccttctattgcacaaagtgtagtattcatagaaaatg 22841398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 37174589 - 37174785
Alignment:
Q  18 attatcattcatggtccatgaaa-tgcgaagagcgttggctataaagaacaaattcaaatttgtggacggttgaattcgaatttcagatgaagattattt 116  Q
    |||||||||| ||||| |||||| || |||||||  |||| || |||||||| | ||| ||||| || ||||  || | |||  ||||||||||| || |    
T  37174589 attatcattcttggtcaatgaaaatgagaagagcactggcaatgaagaacaagtacaagtttgttgatggttccataccaataccagatgaagatgatct 37174688  T
Q  117 gaattgtgctgcatgggaaatgtgtaacaatcttgttcgtacctggataatcaattcaatttcactgtcaattgctcaaagtgttgtgttcatagaa 213  Q
     ||| || | || ||||||| ||| || |||||||||| ||| ||||| || ||||||||||| |  |||||||| || ||||| || |||||||||    
T  37174689 caatcgtccagcttgggaaaggtgcaataatcttgttcatacttggattattaattcaatttccccttcaattgcacacagtgtagttttcatagaa 37174785  T

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