View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17509_low_6 (Length: 332)
Name: NF17509_low_6
Description: NF17509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17509_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 29007784 - 29008063
Alignment:
| Q |
1 |
catatcccaaattttacaactagaagcaatgaaactagtgaacaatatacattgccatgcctccaaaatcctaaaatcctacttacaaggaatcagcccc |
100 |
Q |
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| T |
29007784 |
catatcccaaattttacaacgagaagcaatgaaactagtgaacaatatacattgtcatgcctccaaaa--------tcctacttacaaggaatcagcccc |
29007875 |
T |
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| Q |
101 |
tggacctagcatttaataaaacatgacttgccataaaaatactcatatcatggttggcatatcttaacttaatccttatcctattatgcagttaatgcat |
200 |
Q |
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| T |
29007876 |
tggacctagcatttaataaaacatgacttgccataaaaatactcatatcatggttggcatatcttaacttaatccttatgctattatgcagttaatgcat |
29007975 |
T |
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| Q |
201 |
ttctatcattttcttttgcaaaattgccaaccattaaaaaacctttctatttggcaaaattgccaaaagacaatagtgtgaaataata |
288 |
Q |
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| T |
29007976 |
ttctatcattttcttttgcaaaattgccaaccattaaaaaacctttctatttggcaaaattgccaaaagacaatagtgtgaaataata |
29008063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 5 - 299
Target Start/End: Original strand, 29010217 - 29010502
Alignment:
| Q |
5 |
tcccaaattttacaactagaagcaatgaaactagtgaacaatatacattgccatgcctccaaaatcctaaaatcctacttacaaggaatcagcccctgga |
104 |
Q |
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| T |
29010217 |
tcccaaattttacaactagaagcaatgaaaccaacgaacaacatgcattgacatgcctccaaaa--------tcctacttacaaggaatcagcccctgga |
29010308 |
T |
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| Q |
105 |
cctagcatttaataaaacatgacttgccataaaaatactcatatcatggttggcatatcttaacttaatccttatcctattatgcagttaatgcatttct |
204 |
Q |
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| T |
29010309 |
cctagcatttaatgaaacatgacttgccataaaaatactcatatcatggttggcatatcttaacttaatcgttatgctgttatgcagttgatgcatttct |
29010408 |
T |
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| Q |
205 |
atcattttcttttgcaaaattgccaaccattaaaaaacc-tttctatttggcaaaattgccaaaagacaatagtgtgaaataataaaattctaact |
299 |
Q |
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|||||||||| ||||||||||||||||||| |||||||| ||| |||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
29010409 |
atcattttctcttgcaaaattgccaaccataaaaaaaccttttttatttggcaaaattgccaaaag-caatag-gtgaaataataaaattctaact |
29010502 |
T |
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