View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17509_low_8 (Length: 240)
Name: NF17509_low_8
Description: NF17509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17509_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 33416650 - 33416476
Alignment:
| Q |
1 |
ttacactcagtgggctcaagacaaagtttttcgtgttggagacaacctaggtatgtaaaaggaaaaaataaatgtccatttggtttcaagtttatttagt |
100 |
Q |
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| T |
33416650 |
ttacactcaatgggctcaagacaaagtttttcgtgttggagacaacctaggtatgtaaaaggaaaaaataaatgtccatttggtttcaagtttatttagt |
33416551 |
T |
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| Q |
101 |
tcatagtcaattgcttaactaattagtgtatctcatagttataattaacttttgtatttatcaaacatgatctaa |
175 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33416550 |
tcatagtcaattgcttaactaattagtgtatctcatagttataattaacttttgtatttatcaaacatgatctaa |
33416476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 33424721 - 33424566
Alignment:
| Q |
1 |
ttacactcagtgggctcaagacaaagtttttcgtgttggagacaacctaggtatgtaaaa-ggaaaaaataaatgtccatttggtttcaagtttatttag |
99 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||| |||| | ||||||||||||||||||||||| |
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| T |
33424721 |
ttacactcaatgggctcaagacaaagttttccgtgttggagacaacttaggtatgtaaaagggaaaaaacaaattttcatttggtttcaagtttatttag |
33424622 |
T |
|
| Q |
100 |
ttcatagtcaattgcttaactaattagtgtatctcatagttataattaacttttgt |
155 |
Q |
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|| ||| |||| ||| |||||| |||||| || | || ||||||||||||||||| |
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| T |
33424621 |
tttataatcaactgcataactagttagtgcatattatgattataattaacttttgt |
33424566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 33410806 - 33410664
Alignment:
| Q |
1 |
ttacactcagtgggctcaagacaaagtttttcgtgttggagacaacctaggtatg---taaaaggaaaaaataaatgtccatttggtttcaagtttattt |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| |||||||||| |
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| T |
33410806 |
ttacactcagtgggctcaagacaaagtttttcgtgttggagacaatctaggtatgtaataaaaggaaaaaacaaatatccatttggt------------- |
33410720 |
T |
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| Q |
98 |
agttcatagtcaattgcttaactaattagtgtatctcatagttataattaacttttgt |
155 |
Q |
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|||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33410719 |
--ttcatattcaattgtttaactaattagtgtatctcataattataattaacttttgt |
33410664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 33427874 - 33427978
Alignment:
| Q |
1 |
ttacactcagtgggctcaagacaaagtttttcgtgttggagacaacctaggtatgtaaaaggaaaaaataaatgtccatttggtttcaagtttatttagt |
100 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||| ||||| || |||||||||||||| || | | | |||||||||||| ||||||||||||| |
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| T |
33427874 |
ttacactcaatgggcgtaagacaaagtttttcgtgttggtgacaatcttggtatgtaaaaggataatacgattttccatttggtttaaagtttatttagt |
33427973 |
T |
|
| Q |
101 |
tcata |
105 |
Q |
| |
|
||||| |
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|
| T |
33427974 |
tcata |
33427978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 24984801 - 24984852
Alignment:
| Q |
2 |
tacactcagtgggctcaagacaaagtttttcgtgttggagacaacctaggta |
53 |
Q |
| |
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|||||||| ||||| ||||||||||||||||||||||| |||||||| |||| |
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|
| T |
24984801 |
tacactcaatgggcccaagacaaagtttttcgtgttggtgacaaccttggta |
24984852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 24990631 - 24990682
Alignment:
| Q |
2 |
tacactcagtgggctcaagacaaagtttttcgtgttggagacaacctaggta |
53 |
Q |
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|||||||| ||||| ||||||||||||||||||||||| |||||||| |||| |
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| T |
24990631 |
tacactcaatgggcccaagacaaagtttttcgtgttggtgacaaccttggta |
24990682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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