View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17509_low_9 (Length: 227)
Name: NF17509_low_9
Description: NF17509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17509_low_9 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 37 - 227
Target Start/End: Complemental strand, 33417083 - 33416896
Alignment:
| Q |
37 |
gttcaagtgataatataattagttgtggaaattcaacctcgtcttagtaaaagccgaccaaatccggtagccgaatataatagcatacatatactctatt |
136 |
Q |
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| T |
33417083 |
gttcaagtaataatataattagttgtggaaattcaacctcgtcttagtaaaagccgaccaaatccggtagccgaatataatagcatacatatactctatt |
33416984 |
T |
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| Q |
137 |
attgtcgtgttgaaaaaatctatatacacacatctatataagaattgcacaattcatcaaaatcaaaacaaataacatttgcgcagcattt |
227 |
Q |
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| T |
33416983 |
attgtcgtgtcgataaaatctatatacacacatctatataagaattgcacaattcatcaaaatcaaaacaaat---atttgcgcagcattt |
33416896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 51 - 168
Target Start/End: Complemental strand, 33411224 - 33411108
Alignment:
| Q |
51 |
ataattagttgtggaaattcaacctcgtcttagtaaaagccgaccaaatccggtagccgaatataatagcatacatatactctattattgtcgtgttgaa |
150 |
Q |
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| T |
33411224 |
ataataagttgtggaaattcaacctcgtcttagtaaa-gccgaccaaatccggtagccgtttataatagcaaacaaatattctattattgttgtgacgat |
33411126 |
T |
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| Q |
151 |
aaaatctatatacacaca |
168 |
Q |
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| T |
33411125 |
aaaatcaatacacacaca |
33411108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 51 - 141
Target Start/End: Complemental strand, 33425145 - 33425054
Alignment:
| Q |
51 |
ataattagttgtggaaattcaacctcgtcttagtaaaa-gccgaccaaatccggtagccgaatataatagcatacatatactctattattgt |
141 |
Q |
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| T |
33425145 |
ataataagttgtggaaattcaacctcgtcttagtaaaaagccgaccaaatccggtagccgtttataatagcaaacaaatattctattattgt |
33425054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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