View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1750_high_1 (Length: 729)
Name: NF1750_high_1
Description: NF1750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1750_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 59 - 528
Target Start/End: Complemental strand, 6359020 - 6358531
Alignment:
| Q |
59 |
gcaggtacaagttatagtcagaaatgttaaatgatattgttactagaagaaggattagaagcttcttttgaaagtgattttattccggttgaaatttgct |
158 |
Q |
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| T |
6359020 |
gcaggtacaagttatagtcagaaatgttaaatgatattgttactagaagaaggattagaagcttcttttgaaagtgattttattccggttgaaatttgct |
6358921 |
T |
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| Q |
159 |
ttatctgttccttgtacctaactaacccacattcttggcattggaatgattttccatcttcagtttagacagatcaag------nnnnnnnnnnnnncaa |
252 |
Q |
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| T |
6358920 |
ttatctattccttgtacctaactaacccacattcttggcattggaatgattttccatcttcagtttagacagatcaagaagaaaaaaaaaaaaaaaaaaa |
6358821 |
T |
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| Q |
253 |
aggtctcgaatccaagttttgctgagtatgcataaataatctttgaatgacatttcttgctctataagtgaacttattattgcaaatggtaacttctact |
352 |
Q |
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| T |
6358820 |
aggtctcgaatccaagttttgctgagtatgcataaataatctttgaatgacatttcttgctctataagtgaacttattattgcaaatggtaacttctact |
6358721 |
T |
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| Q |
353 |
tagacgagata--------aaaaataaaacacatacctcagttcctttg-----atgctacaaatcacctactgatgctatctttccctcaaaagccaac |
439 |
Q |
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| T |
6358720 |
tagacgagataaaaaaaataaaaaaaaaacacatacctcagttcctttgggtacatgctgcaaatcacctactgatgctatctttccctcaaaagccaac |
6358621 |
T |
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| Q |
440 |
actgaattgggc-aagcatgcagctatatgataaaatcatgattagaaaaataacaaagaaatgggataataagacgtcacaaatggtat |
528 |
Q |
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| T |
6358620 |
actgaattgggcaaagcatgcagctatatgataaaatcatgattagaaaaataacaaagaaatgggataataagacgtcacaaatggtat |
6358531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 534 - 687
Target Start/End: Complemental strand, 6358491 - 6358338
Alignment:
| Q |
534 |
ttcagagatacattacgagagagtcaaatccacaaaaacatcataaccgtatctaaaacaaaatgtgtaaatccccataagcttaaccttgtgagtggtc |
633 |
Q |
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| T |
6358491 |
ttcagagatacattacgagagagtcaaatccacaaaaacatcataaccgtatctaaaacaaaatgtgtaaatccccataagcttaaccttgtgagtggtc |
6358392 |
T |
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| Q |
634 |
tgtaatccccatatcattatcaactaatttatgttttgaagcataaacctttgg |
687 |
Q |
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| T |
6358391 |
tgtaatccccatatcattatcaactaatttatgttttgaagcataaacctttgg |
6358338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 4e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 65 - 218
Target Start/End: Original strand, 32857478 - 32857631
Alignment:
| Q |
65 |
acaagttatagtcagaaatgttaaatgatattgttactagaagaaggattagaagcttcttttgaaagtgattttattccggttgaaatttgctttatct |
164 |
Q |
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||||||| ||||||||||||||||| |||| || | | |||||||| ||||||||||||| | | || |||||||| | |||| |||||||||||||| |
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| T |
32857478 |
acaagttctagtcagaaatgttaaaggatactgccattggaagaaggcttagaagcttcttctaatagaaattttatttcagttgcaatttgctttatct |
32857577 |
T |
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| Q |
165 |
gttccttgtacctaactaacccacattcttggcattggaatgattttccatctt |
218 |
Q |
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| T |
32857578 |
cttccttgtctctaactaacccacattcttggcattgaaatgcttttccatctt |
32857631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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